View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2611_low_15 (Length: 255)

Name: NF2611_low_15
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2611_low_15
NF2611_low_15
[»] chr7 (23 HSPs)
chr7 (1-247)||(30310179-30310425)
chr7 (44-155)||(9662142-9662251)
chr7 (18-104)||(24282931-24283017)
chr7 (1-80)||(32255047-32255125)
chr7 (1-88)||(40508436-40508523)
chr7 (1-88)||(43459513-43459599)
chr7 (1-54)||(6173455-6173508)
chr7 (1-54)||(43460828-43460881)
chr7 (1-140)||(40509653-40509792)
chr7 (1-53)||(47456381-47456433)
chr7 (1-139)||(47060395-47060533)
chr7 (1-140)||(22115083-22115222)
chr7 (1-54)||(45454096-45454149)
chr7 (1-53)||(4300054-4300106)
chr7 (12-88)||(11501249-11501324)
chr7 (18-82)||(24844336-24844399)
chr7 (1-53)||(32602991-32603043)
chr7 (1-88)||(47454395-47454481)
chr7 (29-88)||(22337343-22337401)
chr7 (1-88)||(41079807-41079893)
chr7 (1-112)||(45455320-45455430)
chr7 (18-88)||(22538820-22538889)
chr7 (1-54)||(33096927-33096980)
[»] chr1 (22 HSPs)
chr1 (75-223)||(7161159-7161307)
chr1 (1-88)||(15072761-15072848)
chr1 (18-88)||(16123362-16123432)
chr1 (68-132)||(19466135-19466199)
chr1 (29-155)||(41873875-41874001)
chr1 (1-103)||(52628830-52628931)
chr1 (68-153)||(36509933-36510017)
chr1 (1-54)||(50444703-50444756)
chr1 (1-144)||(14477706-14477849)
chr1 (1-88)||(35943418-35943505)
chr1 (1-155)||(14470914-14471068)
chr1 (1-122)||(23091409-23091531)
chr1 (1-55)||(27814350-27814404)
chr1 (22-88)||(44999433-44999499)
chr1 (75-119)||(30535609-30535653)
chr1 (1-53)||(41872634-41872686)
chr1 (1-65)||(46111483-46111546)
chr1 (1-80)||(45584989-45585067)
chr1 (1-54)||(44278354-44278407)
chr1 (35-100)||(46467238-46467303)
chr1 (1-86)||(51042316-51042400)
chr1 (18-86)||(16963909-16963976)
[»] chr3 (29 HSPs)
chr3 (1-121)||(53194808-53194928)
chr3 (1-119)||(40364377-40364495)
chr3 (1-155)||(53624267-53624419)
chr3 (44-119)||(20288164-20288239)
chr3 (35-147)||(24403331-24403443)
chr3 (5-116)||(36175325-36175435)
chr3 (35-119)||(20336597-20336681)
chr3 (44-119)||(20314704-20314779)
chr3 (1-88)||(38240964-38241050)
chr3 (1-88)||(42684934-42685021)
chr3 (1-54)||(18197205-18197258)
chr3 (1-119)||(18442310-18442424)
chr3 (1-119)||(19487384-19487498)
chr3 (72-144)||(21074195-21074267)
chr3 (1-85)||(50810808-50810892)
chr3 (1-85)||(50864972-50865056)
chr3 (19-79)||(53187634-53187693)
chr3 (1-53)||(23443463-23443515)
chr3 (18-88)||(27837995-27838063)
chr3 (1-51)||(37736089-37736139)
chr3 (35-88)||(10730977-10731029)
chr3 (1-50)||(40244245-40244294)
chr3 (1-54)||(41544720-41544773)
chr3 (1-53)||(18458663-18458715)
chr3 (79-119)||(20286685-20286725)
chr3 (79-119)||(20335384-20335424)
chr3 (1-53)||(50809479-50809531)
chr3 (1-53)||(50866331-50866383)
chr3 (1-88)||(53420374-53420462)
[»] chr6 (8 HSPs)
chr6 (1-78)||(6452492-6452569)
chr6 (18-85)||(232249-232316)
chr6 (18-88)||(23397326-23397395)
chr6 (38-88)||(32506997-32507047)
chr6 (1-54)||(6452342-6452395)
chr6 (68-119)||(15728855-15728906)
chr6 (18-88)||(29380266-29380335)
chr6 (18-54)||(17837691-17837727)
[»] chr8 (25 HSPs)
chr8 (1-119)||(26697773-26697890)
chr8 (1-54)||(29103545-29103598)
chr8 (1-88)||(8571587-8571675)
chr8 (1-88)||(6397841-6397927)
chr8 (1-88)||(42872161-42872247)
chr8 (44-144)||(45437397-45437497)
chr8 (29-85)||(13116416-13116471)
chr8 (1-85)||(28420148-28420232)
chr8 (12-79)||(17339530-17339596)
chr8 (1-88)||(22551065-22551151)
chr8 (19-54)||(30787605-30787640)
chr8 (1-88)||(41629766-41629852)
chr8 (1-80)||(44076343-44076421)
chr8 (18-87)||(212684-212753)
chr8 (18-87)||(239501-239570)
chr8 (18-87)||(726307-726376)
chr8 (18-87)||(792856-792925)
chr8 (18-87)||(798808-798877)
chr8 (18-79)||(6398478-6398538)
chr8 (1-54)||(26696590-26696643)
chr8 (1-54)||(32798537-32798590)
chr8 (1-78)||(42870871-42870947)
chr8 (1-53)||(28418864-28418916)
chr8 (1-53)||(29104371-29104423)
chr8 (20-88)||(42100078-42100145)
[»] chr2 (15 HSPs)
chr2 (1-155)||(28562714-28562867)
chr2 (44-155)||(2277373-2277484)
chr2 (1-88)||(11315991-11316077)
chr2 (1-80)||(17459311-17459389)
chr2 (1-88)||(32470547-32470633)
chr2 (1-88)||(43033140-43033226)
chr2 (26-98)||(6032275-6032347)
chr2 (44-132)||(34147237-34147325)
chr2 (22-155)||(7436545-7436677)
chr2 (44-92)||(34464069-34464117)
chr2 (1-53)||(36011648-36011700)
chr2 (21-80)||(11547737-11547795)
chr2 (18-80)||(29219460-29219521)
chr2 (18-80)||(29332759-29332820)
chr2 (1-53)||(43034477-43034529)
[»] chr4 (28 HSPs)
chr4 (19-155)||(27847754-27847888)
chr4 (44-155)||(13533166-13533275)
chr4 (1-119)||(42871153-42871270)
chr4 (18-113)||(10168728-10168824)
chr4 (1-88)||(390275-390361)
chr4 (68-153)||(34438528-34438612)
chr4 (18-155)||(53205387-53205524)
chr4 (18-86)||(13166742-13166810)
chr4 (1-80)||(2312462-2312540)
chr4 (28-155)||(37884182-37884308)
chr4 (1-55)||(1188901-1188955)
chr4 (1-144)||(5591363-5591508)
chr4 (5-130)||(44503608-44503733)
chr4 (1-144)||(48126862-48127007)
chr4 (1-55)||(1587240-1587294)
chr4 (19-97)||(11438530-11438608)
chr4 (18-87)||(50546981-50547051)
chr4 (1-54)||(42810208-42810261)
chr4 (44-88)||(53432163-53432207)
chr4 (1-56)||(1831266-1831321)
chr4 (19-121)||(13165571-13165673)
chr4 (19-65)||(393632-393678)
chr4 (4-54)||(31965896-31965946)
chr4 (35-104)||(14524806-14524874)
chr4 (1-81)||(4871342-4871422)
chr4 (12-56)||(10167494-10167538)
chr4 (1-53)||(37882892-37882944)
chr4 (1-53)||(44501576-44501628)
[»] chr5 (9 HSPs)
chr5 (1-104)||(22049092-22049194)
chr5 (1-88)||(325157-325243)
chr5 (18-155)||(33173863-33174001)
chr5 (1-54)||(22047790-22047843)
chr5 (44-132)||(32757926-32758014)
chr5 (1-80)||(39603911-39603989)
chr5 (18-88)||(22308770-22308840)
chr5 (68-119)||(42510236-42510287)
chr5 (52-88)||(1102727-1102763)
[»] scaffold0031 (2 HSPs)
scaffold0031 (1-88)||(124027-124113)
scaffold0031 (1-80)||(125213-125291)
[»] scaffold0019 (2 HSPs)
scaffold0019 (18-86)||(63104-63172)
scaffold0019 (18-53)||(61926-61961)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-77)||(43558-43633)
[»] scaffold1251 (1 HSPs)
scaffold1251 (68-119)||(1025-1076)
[»] scaffold0034 (2 HSPs)
scaffold0034 (1-79)||(108571-108648)
scaffold0034 (1-153)||(109652-109803)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-88)||(127509-127578)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30310179 - 30310425
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30310179 aataaaacgtacatttgagttcctcattttttcctccgtttgccaaataaatcccagactgttaaagttaaccccaaatgtctatggtggactaacatta 30310278  T
Q  101 tagagagtccaccatagactttgataatttttaaaattttaaccattagatctttgcccaaaaaagaacaccgtatgatcatgcatatctattgtatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30310279 tagagagtccaccatagactttgataatttttaaaattttaaccattagatctttgcccaaaaaagaacaccatatgatcatgcatatctattgtatttt 30310378  T
Q  201 acggtgaagcaacaagacctaatgcnnnnnnnaccttttcttcatct 247  Q
    ||||||||||||||| |||||||||       |||||||||||||||    
T  30310379 acggtgaagcaacaacacctaatgctttttttaccttttcttcatct 30310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 9662251 - 9662142
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaac 143  Q
    |||||||||||  |||||||||| |||||  |||||||||||||| ||| ||||||||||| |||||||||||||| ||  ||||||||  |||||||||    
T  9662251 caaataaatcca-gactgttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaattttt-caattttaac 9662154  T
Q  144 cattagatcttt 155  Q
    |||| |||||||    
T  9662153 catttgatcttt 9662142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 24283017 - 24282931
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattataga 104  Q
    |||||||||  ||||| |||||||||||||||||||| ||  ||||||  ||||||||||||||||||||| ||  |||||||||||    
T  24283017 agtccctcacattttcctccgtttgccaaataaatccatgggtgttaactttaaccccaaatgtctatggtggatcaacattataga 24282931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32255047 - 32255125
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    ||||||||||||||||   ||||||| |||||| ||||||||||||||||||||| ||| |||||  |||||||||||||    
T  32255047 aataaaacgtacattttgatccctcactttttcctccgtttgccaaataaatccc-gacggttaagtttaaccccaaatg 32255125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40508436 - 40508523
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |   ||||||  |||| ||||||||||||||||    
T  40508436 aataaaacgtacgtttaagtccctcactttttcctccgttagccaaataaatccttcggtgttaagtttaatcccaaatgtctatggt 40508523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43459513 - 43459599
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||| | ||| |||||||||| ||||| ||||||||||||||||||| | | |||||||  ||||| |||||||||||||||    
T  43459513 aataaaacgtgcgtttaagtccctcatgttttcctccgtttgccaaataaatctc-ggctgttaagtttaactccaaatgtctatggt 43459599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6173508 - 6173455
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    ||||||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  6173508 aataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 6173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43460881 - 43460828
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||    
T  43460881 aataaaacgtacattttagtccctcactttttcctccatttgccaaataaatcc 43460828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 40509792 - 40509653
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| ||| ||| ||||| |||||| ||||||| |||||||||||  |   ||||||  |||||||||||||||||| || ||| ||| |||    
T  40509792 aataaaacgtacgtttaagttcctcactttttcctccgtttaccaaataaatcattcggtgttaagtttaaccccaaatgtctatagtggaccaacctta 40509693  T
Q  101 tagag-agtccaccatagactttgataatttttaaaatttt 140  Q
     ||||  |||||||||||||||   |||||||| |||||||    
T  40509692 -agagtggtccaccatagacttcattaattttttaaatttt 40509653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47456433 - 47456381
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| |||  |||||||||||||||||| ||||||||||||||||    
T  47456433 aataaaacgtactttttggtccctcattttttcttctgtttgccaaataaatc 47456381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 47060533 - 47060395
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| |||  ||||||||   ||| ||||||||||||||||||| || |||||||||  ||||| |||||||| |||||| ||| ||| |||    
T  47060533 aataaaacgtacgttttggtccctcacccttttttccgtttgccaaataaat-ccggactgttaagtttaacaccaaatgtatatggtggaccaacctta 47060435  T
Q  101 tagagagtccaccatagactttgat-aatttttaaaattt 139  Q
       | |||||||||||||| ||  | ||||||||||||||    
T  47060434 agaatagtccaccatagaccttattaaatttttaaaattt 47060395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 22115222 - 22115083
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| ||| ||| ||||| |||||| ||||||  |||||||||||  |   ||||||  |||||||||||||||||| || ||| ||| |||    
T  22115222 aataaaacgtacgtttaagttcctcactttttcctccgttnaccaaataaatcnttcggtgttaagtttaaccccaaatgtctatagtggaccaacctta 22115123  T
Q  101 tagag-agtccaccatagactttgataatttttaaaatttt 140  Q
     ||||  |||||||||||||||   |||||||| |||||||    
T  22115122 -agagtggtccaccatagacttcattaattttttaaatttt 22115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45454096 - 45454149
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||| ||| ||| ||||||||| |||||| ||||||||||||||||||||    
T  45454096 aataaaacatacgttttagtccctcactttttcctccgtttgccaaataaatcc 45454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4300106 - 4300054
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| ||| ||||||||| |||||| || ||||||||||||||||    
T  4300106 aataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatc 4300054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 11501249 - 11501324
Alignment:
Q  12 catttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||| |||||||||  ||||| ||| ||||||||||||||||| |||||||||  |||||  ||||||||||||||    
T  11501249 cattttagtccctcaccttttcctccatttgccaaataaatccc-gactgttaactttaacttcaaatgtctatggt 11501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 24844336 - 24844399
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtc 82  Q
    |||||||||  |||||||||||||||||||||||| ||| ||||||||  |||||| ||||||||    
T  24844336 agtccctcacattttcttccgtttgccaaataaat-cctcactgttaagtttaacctcaaatgtc 24844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32602991 - 32603043
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| ||| ||||||||| |||||  |||||||||||||||||||    
T  32602991 aataaaacgtacgttttagtccctcactttttactccgtttgccaaataaatc 32603043  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47454395 - 47454481
Alignment:
Q  1 aataaaacgtacatttgagtccctc-attttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||  ||||||| | |||||||| ||||||||||||||||||| |||| ||||  ||||| | |||||||||||||    
T  47454395 aataaaacgtacattttggtccctcaagtttttctt-cgtttgccaaataaatccc-gactattaactttaactctaaatgtctatggt 47454481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 22337401 - 22337343
Alignment:
Q  29 ttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||| |||||||||||||||||| |||||| |||||| |||||  ||||||||||||||    
T  22337401 ttttcctccgtttgccaaataaat-cctgaccgttaaatttaacttcaaatgtctatggt 22337343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41079893 - 41079807
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| |||  |||||| || ||||| ||||||||| |||||||||||| || |||||  ||||| |||||| ||||||||    
T  41079893 aataaaacgtacgttttggtcccttatcttttcctccgtttgctaaataaatccct-accgttaactttaactccaaatatctatggt 41079807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45455430 - 45455320
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||||||||||||   ||||||| |||||  |||||||||||||||||| | || |||||||  ||||||| ||||| |||| ||  || |||||||    
T  45455430 aataaaacgtacattttgatccctcacttttttctccgtttgccaaataaat-catggctgttaagtttaaccctaaatgcctatagtgtaccaacatta 45455332  T
Q  101 tagagagtccac 112  Q
    || | |||||||    
T  45455331 tatatagtccac 45455320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 22538889 - 22538820
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||| ||||| ||||||||||||||||||| | ||| |||||  ||||| |||||| ||||||||    
T  22538889 agtccctcatcttttcctccgtttgccaaataaatctc-gacggttaactttaactccaaatatctatggt 22538820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33096927 - 33096980
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||| ||| |||  |||||||| |||||| ||||||||||||||||||||    
T  33096927 aataaaacttaccttttggtccctcactttttcctccgtttgccaaataaatcc 33096980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 7161307 - 7161159
Alignment:
Q  75 caaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaaccattagatctttgcccaaaaaagaacaccgt 174  Q
    ||||||||||| || ||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| | || |||||||||||||    
T  7161307 caaatgtctattgtggaccaacattatagatagtccaccatagaccttaataatttttaaaattttaaccattagatcttttctcataaaagaacaccgt 7161208  T
Q  175 atgatcatgcatatctattgtattttacggtgaagcaacaagacctaat 223  Q
    |||||||||||| |||||||| ||||| ||||||||| ||| |||||||    
T  7161207 atgatcatgcatgtctattgtgttttatggtgaagcagcaacacctaat 7161159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15072848 - 15072761
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||  |||||| |||||||| |||||||||||||||||||| || |||||||  |||||| ||||||||||||||    
T  15072848 aataaaacgtacattttggtcccttattttttcctccgtttgccaaataaatccatgtctgttaactttaacctcaaatgtctatggt 15072761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 16123362 - 16123432
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||  |||| | ||||||||||||||    
T  16123362 agtccctcattttttcttccgtttgccaaataaatccctggttgttaagtttaatctcaaatgtctatggt 16123432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 19466199 - 19466135
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataattttt 132  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||| ||  ||||||||    
T  19466199 ttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttt 19466135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 41874001 - 41873875
Alignment:
Q  29 ttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagag-agtccaccatagactttgataa 127  Q
    ||||| ||||||| |||||||||||| ||  ||||||  |||||| |||||||||||||| ||| ||| ||| ||||  |||||||||||||||   |||    
T  41874001 ttttcctccgtttaccaaataaatccttggttgttaagtttaaccacaaatgtctatggtggaccaacctta-agagtggtccaccatagacttcattaa 41873903  T
Q  128 tttttaaaattttaaccattagatcttt 155  Q
    ||||| ||||||||||| || |||||||    
T  41873902 ttttttaaattttaaccgtttgatcttt 41873875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 52628931 - 52628830
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| |||  ||||||||||||||| ||||||||||||||||||| |  || |||||  |||||||||||| | || ||| ||| |||||||    
T  52628931 aataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatctc-aaccgttaagtttaaccccaaatatgtaaggtggaccaacatta 52628833  T
Q  101 tag 103  Q
    |||    
T  52628832 tag 52628830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 36509933 - 36510017
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaaccattagatct 153  Q
    |||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||  ||||||||  ||||||| ||||| |||||    
T  36509933 ttaacctcaaatgtctatggtggactaacattatagatattccaccatagaccttattaattttt-taattttagccatttgatct 36510017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50444756 - 50444703
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  50444756 aataaaacgtacattttggtccctcattttttcctccgattgccaaataaatcc 50444703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 14477849 - 14477706
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| ||| ||||||||| |||||  |||||||||||||||||||| |   ||||||  ||||| | ||||||||||||| ||  ||  |||    
T  14477849 aataaaacgtacgtttaagtccctcacttttttctccgtttgccaaataaatccttcgatgttaagtttaactctaaatgtctatggtagatcaatctta 14477750  T
Q  101 tagag-agtccaccatagactttgataatttttaaaattttaacc 144  Q
     ||||  |||||||||||||||   |||||||| |||||||||||    
T  14477749 -agagttgtccaccatagacttcattaattttttaaattttaacc 14477706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35943505 - 35943418
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaat-ccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||  |||| ||| |||||| | |||||||||||||||| ||||| |||||||  ||||||| |||||||||||||    
T  35943505 aataaaacgtacattttggtcc-tcactttttccttcgtttgccaaataaatcccctggctgttaagtttaaccctaaatgtctatggt 35943418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 14470914 - 14471068
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||||||||  || ||||||||| |||||| | |||||||||||||||||| |   ||||||  ||||||||||| |||||| || ||| ||| |||    
T  14470914 aataaaacgtacggttaagtccctcactttttccttcgtttgccaaataaatccttcggtgttaagtttaaccccaaacgtctatagtggaccaacctta 14471013  T
Q  101 tagag-agtccaccatagactttgataatttttaaaattttaaccattagatcttt 155  Q
     ||||  |||||||||| ||||   |||||||| ||||||| ||| || |||||||    
T  14471014 -agagtggtccaccataaacttcattaattttttaaattttgaccgtttgatcttt 14471068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 23091409 - 23091531
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccct-gactgttaaagttaaccccaaatgtctatggttgactaacatt 99  Q
    |||||||||||| |||  ||| |||| |||||  |||||||||||||||||||||| | |||||||  |||| | |||||||||||||| ||| ||| ||    
T  23091409 aataaaacgtacgttttggtcactcacttttttctccgtttgccaaataaatccctagtctgttaagtttaatctcaaatgtctatggtggaccaacttt 23091508  T
Q  100 atagagagtccaccatagacttt 122  Q
    | |    ||||||||||||||||    
T  23091509 aaaagtggtccaccatagacttt 23091531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27814350 - 27814404
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccc 55  Q
    |||||||||||| |||  ||||||||||||||| || ||||||||||||||||||    
T  27814350 aataaaacgtaccttttggtccctcattttttcctctgtttgccaaataaatccc 27814404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 44999499 - 44999433
Alignment:
Q  22 cctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| || |||||||||||||||||||  |||||||  ||||||  |||||||||||||    
T  44999499 cctcattttttcctctgtttgccaaataaatccctagctgttaactttaaccttaaatgtctatggt 44999433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 30535653 - 30535609
Alignment:
Q  75 caaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||    
T  30535653 caaatgtctatggtggaccaacattatagatagtccaccatagac 30535609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41872634 - 41872686
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| ||| |||| |||| |||||| |||||||||||||||||||    
T  41872634 aataaaacgtacgtttaagtctctcactttttcctccgtttgccaaataaatc 41872686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 46111546 - 46111483
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaa 65  Q
    |||||||||||| |||  || |||||||||||| | ||||||||||||||||||| |||||||||    
T  46111546 aataaaacgtaccttttggttcctcattttttccttcgtttgccaaataaatccc-gactgttaa 46111483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 45585067 - 45584989
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||| |||  |||| ||| |||||| |||||||||||||||||| |||||| |||||  |||| ||||||||    
T  45585067 aataaaacgtaccttttggtccttcactttttcctccgtttgccaaataaat-cctgaccgttaagtttaaacccaaatg 45584989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44278407 - 44278354
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||| |||  ||||||||||||||  ||||||||||||||| ||||    
T  44278407 aataaaacgtacgttttggtccctcatttttttctccgtttgccaaatagatcc 44278354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 46467238 - 46467303
Alignment:
Q  35 tccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||| |||||||||||||  |||||||  ||||||  ||||||||||||| ||| |||||||    
T  46467238 tccgtttgtcaaataaatccctcgctgttaagtttaaccataaatgtctatggtggaccaacatta 46467303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 51042400 - 51042316
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatg 86  Q
    ||||||||  || ||| |||||||| |||||||| ||||||||||||||||| | |||| |||||   ||||| ||||||||||||    
T  51042400 aataaaactcacgttttagtccctctttttttct-ccgtttgccaaataaattcatgaccgttaagtataacctcaaatgtctatg 51042316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 16963909 - 16963976
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatg 86  Q
    |||||||||| ||||| ||||||||||||||||||  |||||||||||  ||||| | |||||| ||||    
T  16963909 agtccctcatcttttcctccgtttgccaaataaat-gctgactgttaactttaactctaaatgtttatg 16963976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 53194928 - 53194808
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| |||  |||||||| |||||| ||  |||||||||||||||| || |||||||  ||||| | ||||||||||||| |||| ||||||    
T  53194928 aataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatccatgtctgttaagtttaactcaaaatgtctatggtggactcacatta 53194829  T
Q  101 tagagagtccaccatagactt 121  Q
    |||| ||||||||||||||||    
T  53194828 tagatagtccaccatagactt 53194808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40364377 - 40364495
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||| |||| ||| |||||||||||||||  |||||||||||||||||||| |   ||||||  ||||||  |||||||||||||  || |||||||    
T  40364377 aataaaatgtacgtttaagtccctcatttttttctccgtttgccaaataaatccttcggtgttaagtttaacctaaaatgtctatggtgaaccaacatta 40364476  T
Q  101 tagagagtccaccatagac 119  Q
    |||| ||||||||||||||    
T  40364477 tagatagtccaccatagac 40364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 53624419 - 53624267
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||||||||||||  ||| |||| |||||  || |||||||||||||||||  ||| ||||   |||||||||||||| |||||| ||| |||||||    
T  53624419 aataaaacgtacattttggtcactcacttttttctcggtttgccaaataaatcca-gacggttaggtttaaccccaaatgtatatggtggaccaacatta 53624321  T
Q  101 tagagagtccaccatagactttgataatttttaaaattttaaccattagatcttt 155  Q
    |||| |||||||||||||| ||  ||||||||  |||||||||| || |||||||    
T  53624320 tagatagtccaccatagaccttattaattttt-caattttaaccttttgatcttt 53624267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 20288239 - 20288164
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||||| | ||||||||||||    
T  20288239 caaataaatccctgactgttaagtttaactccaaatgtctatggtggaccaacattatagatattccaccatagac 20288164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 24403331 - 24403443
Alignment:
Q  35 tccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaa 134  Q
    |||||||| ||| ||||||| ||  ||||||  ||||||| |||||||||||||  |||||||||||||| ||||||||||| || ||  ||||||||      
T  24403331 tccgtttgtcaagtaaatccatgtttgttaactttaaccctaaatgtctatggtgaactaacattatagatagtccaccataaaccttattaattttttc 24403430  T
Q  135 aattttaaccatt 147  Q
    |||||||||||||    
T  24403431 aattttaaccatt 24403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 36175325 - 36175435
Alignment:
Q  5 aaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattataga 104  Q
    |||||||| |||  || |||||||||||  ||||||||||||||||||||  |||||||||  ||||||||||||||||||| | ||  ||||||||| |    
T  36175325 aaacgtacgttttggtgcctcatttttttctccgtttgccaaataaatccg-gactgttaagtttaaccccaaatgtctatgatggatcaacattatata 36175423  T
Q  105 gagtccaccata 116  Q
     |||||||||||    
T  36175424 tagtccaccata 36175435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 20336681 - 20336597
Alignment:
Q  35 tccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||| | ||||||||| | ||||||||||  ||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20336681 tccgttagtcaaataaattcatgactgttaagtttaactccaaatgtctatgttggaccaacattatagatagtccaccatagac 20336597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 20314779 - 20314704
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    ||||||||| | ||||||||||  ||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20314779 caaataaattcatgactgttaagtttaactccaaatgtctatgttagaccaacattatagatagtccaccatagac 20314704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38240964 - 38241050
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| ||| ||||| |||  ||||| ||||||||||||||||||||| | |||||||  ||||| |||||||||||||||    
T  38240964 aataaaacgtacgtttaagtccttcagattttcctccgtttgccaaataaatccc-ggctgttaagtttaactccaaatgtctatggt 38241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42684934 - 42685021
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||  || ||| |||||||||||||||  |  |||| |||||||||||| ||||||||||  |||||||||||||||||||||    
T  42684934 aataaaactgacgttttagtccctcatttttttctatgtttaccaaataaatccttgactgttaagtttaaccccaaatgtctatggt 42685021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18197205 - 18197258
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||| |||  ||||||||||||||| ||||||||||||||||||||    
T  18197205 aataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatcc 18197258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18442310 - 18442424
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||||  || ||| ||||| |||||||||| ||   ||||||||||||| | ||  ||||||  ||||||||||||||||||||| ||| |||||||    
T  18442310 aataaaacccacgttttagtccatcattttttcctc---ttgccaaataaattcatgt-tgttaagtttaaccccaaatgtctatggtggaccaacatta 18442405  T
Q  101 tagagagtccaccatagac 119  Q
    | || ||||||||||||||    
T  18442406 tcgatagtccaccatagac 18442424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 19487384 - 19487498
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    ||||||||  || ||| ||||| |||||||||| ||   ||||||||||||| | ||  ||||||  ||||||||||||||||||||| ||| |||||||    
T  19487384 aataaaacccacgttttagtccatcattttttcctc---ttgccaaataaattcatgt-tgttaagtttaaccccaaatgtctatggtggaccaacatta 19487479  T
Q  101 tagagagtccaccatagac 119  Q
    | || ||||||||||||||    
T  19487480 tcgatagtccaccatagac 19487498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 21074267 - 21074195
Alignment:
Q  72 ccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaacc 144  Q
    |||||||||| |||||| ||| ||||||||||| |||||||||||||| ||  ||||||||  ||||||||||    
T  21074267 ccccaaatgtatatggtggaccaacattatagatagtccaccatagaccttattaattttttcaattttaacc 21074195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 50810892 - 50810808
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctat 85  Q
    ||||||||  || ||| |||||||||||||||| ||||||||||||||||||| |  ||||||||  ||||| | ||||||||||    
T  50810892 aataaaacacacgttttagtccctcattttttcctccgtttgccaaataaatctcaaactgttaactttaactctaaatgtctat 50810808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50864972 - 50865056
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctat 85  Q
    ||||||||  || ||| |||||||||||||||| ||||||||||||||||||| |  ||||||||  ||||| | ||||||||||    
T  50864972 aataaaacacacgttttagtccctcattttttcctccgtttgccaaataaatctcaaactgttaactttaactctaaatgtctat 50865056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53187634 - 53187693
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaat 79  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||  ||||||||||||    
T  53187634 gtccctcactttttcttccgtttgccaaataaatccct-accgttaagtttaaccccaaat 53187693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23443515 - 23443463
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| ||| ||||| |||| |||||||| ||||||||||||||||    
T  23443515 aataaaacgtacctttaagtccttcatcttttcttctgtttgccaaataaatc 23443463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 27837995 - 27838063
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||  ||||| |||||||||||||||||| |||||||||| || |||||  ||||||||||||||    
T  27837995 agtccctcaccttttcctccgtttgccaaataaat-cctgactgtt-aacttaacttcaaatgtctatggt 27838063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37736139 - 37736089
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaa 51  Q
    |||||||||||| ||| ||||||||| |||||  |||||||||||||||||    
T  37736139 aataaaacgtacgttttagtccctcacttttttctccgtttgccaaataaa 37736089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 10730977 - 10731029
Alignment:
Q  35 tccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||||||| |||||||||  |||||  ||||||||||||||    
T  10730977 tccgtttgccaaataaatccc-gactgttaactttaacttcaaatgtctatggt 10731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40244245 - 40244294
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataa 50  Q
    ||||||||||||||||  ||||||||  ||||| ||||||||||||||||    
T  40244245 aataaaacgtacattttggtccctcaaattttcctccgtttgccaaataa 40244294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41544720 - 41544773
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||| ||||||| ||| ||||||||| |||||| || |||||||||||||||||    
T  41544720 aatataacgtacgtttaagtccctcactttttcctctgtttgccaaataaatcc 41544773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18458715 - 18458663
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||| | | ||| ||||||||| |||||| |||||||||||||||||||    
T  18458715 aataaaacttgcgttttagtccctcactttttcctccgtttgccaaataaatc 18458663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 20286685 - 20286725
Alignment:
Q  79 tgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  20286685 tgtctatggtggaccaacattatagatagtccaccatagac 20286725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 20335384 - 20335424
Alignment:
Q  79 tgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  20335384 tgtctatggtggaccaacattatagatagtccaccatagac 20335424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50809479 - 50809531
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    ||||||||  || ||| ||||||||| |||||| |||||||||||||||||||    
T  50809479 aataaaacacacgttttagtccctcactttttcctccgtttgccaaataaatc 50809531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50866383 - 50866331
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    ||||||||  || ||| ||||||||| |||||| |||||||||||||||||||    
T  50866383 aataaaacacacgttttagtccctcactttttcctccgtttgccaaataaatc 50866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 53420374 - 53420462
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccct-gactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| |||  |||||||| |||||  |||||||  ||||||||||||| | || ||||  |||||| ||||||||||||||    
T  53420374 aataaaacgtacgttttggtccctcacttttttctccgtttatcaaataaatccctagtctattaagtttaaccacaaatgtctatggt 53420462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6452569 - 6452492
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaa 78  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| | ||||||    
T  6452569 aataaaacgtacgtttgagtccctcattttttcctccgtttgccaaataaatccttgaccgttaaagtttaacccaaa 6452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 232249 - 232316
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctat 85  Q
    ||||||||| |||||| |||||||||||||||||||||  ||||||||  ||||| | ||||||||||    
T  232249 agtccctcactttttcctccgtttgccaaataaatcccaaactgttaactttaactctaaatgtctat 232316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 23397395 - 23397326
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||  ||||| ||||||||||||||||||||| ||| |||||| |||||  ||||||||||||||    
T  23397395 agtccctcaccttttcctccgtttgccaaataaatccc-gaccgttaaatttaacttcaaatgtctatggt 23397326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 32507047 - 32506997
Alignment:
Q  38 gtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  32507047 gtttgccaaataaatccttgactgttaagtttaaccccaaatatctatggt 32506997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6452342 - 6452395
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    ||||||| |||| ||| ||||||||| |||||| ||||||||||||||||||||    
T  6452342 aataaaaggtacgttttagtccctcactttttcctccgtttgccaaataaatcc 6452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 15728855 - 15728906
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||    
T  15728855 ttaacctcaaatatctatggtggaccaacattatagatagtccaccatagac 15728906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 29380266 - 29380335
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||  ||||||||||||||||||||||||||| ||| |||||  |||||  ||||||| ||||||    
T  29380266 agtccctcaccttttcttccgtttgccaaataaatccc-gaccgttaattttaacttcaaatgtatatggt 29380335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 17837691 - 17837727
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  17837691 agtccctcatcttttcttccgtttaccaaataaatcc 17837727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26697890 - 26697773
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| ||| ||||||||| |||||||||| |||| | ||||||||| | | ||||||  |||||||||||||| |||||| ||| |||||||    
T  26697890 aataaaacgtacgttttagtccctcactttttcttccttttgtcgaataaatcc-taattgttaagtttaaccccaaatgtttatggtggaccaacatta 26697792  T
Q  101 tagagagtccaccatagac 119  Q
    || | ||||||||||||||    
T  26697791 tatatagtccaccatagac 26697773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29103545 - 29103598
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  29103545 aataaaacgtacatttgagtccctcattttttcctccgattgctaaataaatcc 29103598  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8571675 - 8571587
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccct-gactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| |||  |||| |||||||||  ||||||| |||||||||||||| | |||||||  |||||||||||||||||||||    
T  8571675 aataaaacgtacgttttggtccttcatttttttctccgtttaccaaataaatccctagtctgttaagtttaaccccaaatgtctatggt 8571587  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6397841 - 6397927
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||| ||||||| |||||||||||||||  |||||||||||||||||| | ||| ||||||| ||||| ||||||  |||||||    
T  6397841 aataaaacttacattttagtccctcatttttttctccgtttgccaaataaat-catgaatgttaaatttaactccaaataactatggt 6397927  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 42872247 - 42872161
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| ||| ||||| ||| |||||| |||||||| ||||||||| |||||| |||||  |||||| ||||||||||||||    
T  42872247 aataaaacgtacgttttagtccttcactttttcctccgtttgtcaaataaat-cctgacggttaactttaacctcaaatgtctatggt 42872161  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 45437497 - 45437397
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaac 143  Q
    ||||||||||||||||||||||  |||||||||||| | |||||  | | ||||||||||| ||| ||||||| || ||  ||||||||  |||||||||    
T  45437497 caaataaatccctgactgttaagtttaaccccaaatatttatggcgggccaacattatagacagtgcaccatataccttattaattttttcaattttaac 45437398  T
Q  144 c 144  Q
    |    
T  45437397 c 45437397  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 13116416 - 13116471
Alignment:
Q  29 ttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctat 85  Q
    ||||| ||||||||||||||||||||| |||||||||  ||||| ||||||||||||    
T  13116416 ttttcctccgtttgccaaataaatccc-gactgttaactttaactccaaatgtctat 13116471  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28420232 - 28420148
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctat 85  Q
    ||||||||  || ||| |||||||||||||||| |||||||| |||||||||| |  ||||||||  ||||| | ||||||||||    
T  28420232 aataaaacacacgttttagtccctcattttttcctccgtttgtcaaataaatctcaaactgttaactttaactctaaatgtctat 28420148  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 17339596 - 17339530
Alignment:
Q  12 catttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaat 79  Q
    ||||| |||||||||  ||||| |||||||||||||||||| ||||||||||||  ||||| ||||||    
T  17339596 cattttagtccctcacgttttcctccgtttgccaaataaat-cctgactgttaagtttaactccaaat 17339530  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22551065 - 22551151
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||  |||  |||||||| ||||||| || ||||||||||||||||  || ||||||  |||||||||||| ||||||||    
T  22551065 aataaaacgtatcttttggtccctcactttttct-ccatttgccaaataaatcctggattgttaagtttaaccccaaatctctatggt 22551151  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 30787640 - 30787605
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||| |||||||||||||||||||||||||||    
T  30787640 gtccctcactttttcttccgtttgccaaataaatcc 30787605  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41629766 - 41629852
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||| ||||   |||||||  ||||||||||||||||||||||||||| ||| |||||  | ||| ||||| |||||||||    
T  41629766 aataaaacgtatattttgatccctcaagttttcttccgtttgccaaataaatccc-gaccgttaacttgaactccaaaagtctatggt 41629852  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44076421 - 44076343
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||  |||  || ||||| |||||| |||||||||||||||||||||| || |||||  |||||||||||||    
T  44076421 aataaaacgtatcttttggtgcctcaatttttcctccgtttgccaaataaatccct-acagttaagtttaaccccaaatg 44076343  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 212753 - 212684
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatgg 87  Q
    ||||||||| |||||| | |||||| ||||||||||  ||  ||||||  ||||||||||||||||||||    
T  212753 agtccctcactttttccttcgtttgtcaaataaatctatgggtgttaactttaaccccaaatgtctatgg 212684  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 239501 - 239570
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatgg 87  Q
    ||||||||| |||||| | |||||| ||||||||||  ||  ||||||  ||||||||||||||||||||    
T  239501 agtccctcactttttccttcgtttgtcaaataaatctatgggtgttaactttaaccccaaatgtctatgg 239570  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 726376 - 726307
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatgg 87  Q
    ||||||||| |||||| | |||||| ||||||||||  ||  ||||||  ||||||||||||||||||||    
T  726376 agtccctcactttttccttcgtttgtcaaataaatctatgggtgttaactttaaccccaaatgtctatgg 726307  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 792856 - 792925
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatgg 87  Q
    ||||||||| |||||| | |||||| ||||||||||  ||  ||||||  ||||||||||||||||||||    
T  792856 agtccctcactttttccttcgtttgtcaaataaatctatgggtgttaactttaaccccaaatgtctatgg 792925  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 798877 - 798808
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatgg 87  Q
    ||||||||| |||||| | |||||| ||||||||||  ||  ||||||  ||||||||||||||||||||    
T  798877 agtccctcactttttccttcgtttgtcaaataaatctatgggtgttaactttaaccccaaatgtctatgg 798808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 6398538 - 6398478
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaat 79  Q
    |||||||||||||||| |||||||| ||||||||| | ||||||||||  ||||||| ||||    
T  6398538 agtccctcattttttcctccgtttgtcaaataaat-catgactgttaagtttaaccctaaat 6398478  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26696590 - 26696643
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||| |||||||  |||||||| |||||| ||| ||||||||||||||||    
T  26696590 aataaaacatacattttggtccctcactttttcctccatttgccaaataaatcc 26696643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32798590 - 32798537
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||| ||| ||||||||| |||||  |||||||| |||||||||||    
T  32798590 aataaaacgtaccttttagtccctcaattttttctccgtttgtcaaataaatcc 32798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42870871 - 42870947
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaa 78  Q
    |||||||||||| ||| ||||||| | |||||| || ||||||| ||| ||| ||||||||||||  |||||||||||    
T  42870871 aataaaacgtacgttttagtcccttactttttcgtctgtttgccgaatgaat-cctgactgttaagtttaaccccaaa 42870947  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28418864 - 28418916
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    ||||||||  || ||| ||||||||| |||||| |||||||||||||||||||    
T  28418864 aataaaacacacgttttagtccctcactttttcctccgtttgccaaataaatc 28418916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29104423 - 29104371
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||  ||| |||||||||||||||| || ||||| ||||||||||    
T  29104423 aataaaacgtatgtttaagtccctcattttttcctctgtttgtcaaataaatc 29104371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 42100145 - 42100078
Alignment:
Q  20 tccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||| ||||| |||||||||||||||| |||| |||||||||  |||||  ||||||||| ||||    
T  42100145 tccctcatattttcctccgtttgccaaataattccc-gactgttaactttaacttcaaatgtctttggt 42100078  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 28562867 - 28562714
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||| ||| |||  |||||||| |||||| |||||||| |||||||||||  |||||||||  |||| ||||||| | |||||| ||| |||||||    
T  28562867 aataaaacataccttttggtccctcactttttcctccgtttgtcaaataaatcca-gactgttaagtttaatcccaaatatatatggtggaccaacatta 28562769  T
Q  101 tagagagtccaccatagactttgataatttttaaaattttaaccattagatcttt 155  Q
    |||| |||||||||||||| ||  ||| ||||  |||||||||| || |||||||    
T  28562768 tagatagtccaccatagaccttattaaattttccaattttaaccctttgatcttt 28562714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 2277484 - 2277373
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaac 143  Q
    ||||||||||| ||   |||||  ||||||||||||||||||||| ||| |||||  |||| |||||||||||||| ||  ||||||||  |||||||||    
T  2277484 caaataaatccatgggagttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttttcaattttaac 2277385  T
Q  144 cattagatcttt 155  Q
    | || |||||||    
T  2277384 cctttgatcttt 2277373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11315991 - 11316077
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| ||| |||||||||  ||||| ||||||||||||||||||||| | |||||||  ||||  |||||||||||||||    
T  11315991 aataaaacgtacgtttaagtccctcaggttttcctccgtttgccaaataaatccc-ggctgttaagtttaattccaaatgtctatggt 11316077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17459311 - 17459389
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||| ||| ||||||||| |||||| ||||||||||||||||||  |||||| ||||  |||||||||||||    
T  17459311 aataaaacgtacgtttaagtccctcactttttcctccgtttgccaaataaat-tctgacttttaagtttaaccccaaatg 17459389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32470633 - 32470547
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| ||| ||| |||||| ||||| |||||||| |||||||||||| | |||||||  ||||| |||||||||||||||    
T  32470633 aataaaacgtacgtttaagttcctcatgttttcctccgtttgtcaaataaatccc-ggctgttaagtttaactccaaatgtctatggt 32470547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43033140 - 43033226
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| |||  |||||||| |||||| ||||||||||||||||||||  || ||||||  |||||| ||||||||||||||    
T  43033140 aataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcctcga-tgttaagtttaacctcaaatgtctatggt 43033226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 6032347 - 6032275
Alignment:
Q  26 attttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacat 98  Q
    |||||||| || ||||||||||||||||| |||| |||||  |||||  |||||||||||||||||| |||||    
T  6032347 attttttcctctgtttgccaaataaatccatgaccgttaactttaacttcaaatgtctatggttgaccaacat 6032275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 34147237 - 34147325
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataattttt 132  Q
    ||||||||||| ||  ||||||  ||||||||||||||||||||| ||| |||||  |||| |||||||||||||| ||  ||||||||    
T  34147237 caaataaatccatgggtgttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttt 34147325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 7436545 - 7436677
Alignment:
Q  22 cctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactt 121  Q
    ||||| ||||||||||||||| ||||||||| ||| || |||||   ||||||||||||| ||||||  || |||||| |||| |||||| | |||||||    
T  7436545 cctcaatttttcttccgtttgtcaaataaat-cctaacagttaagtctaaccccaaatgtatatggtgaaccaacattgtagatagtccatcgtagactt 7436643  T
Q  122 tgataatttttaaaattttaaccattagatcttt 155  Q
    |  |||||| |  |||||||| | || |||||||    
T  7436644 tattaatttgtccaattttaatcctttgatcttt 7436677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 34464069 - 34464117
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgac 92  Q
    |||||||||| |||||||||||  |||||||||||||||||| ||||||    
T  34464069 caaataaatctctgactgttaagtttaaccccaaatgtctatcgttgac 34464117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36011700 - 36011648
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    ||||||| |||| ||| |||||||||||||||  |||||||||||||||||||    
T  36011700 aataaaatgtacgttttagtccctcattttttaatccgtttgccaaataaatc 36011648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 11547737 - 11547795
Alignment:
Q  21 ccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    ||||||||||||| | |||||| ||||||||| ||||||||||||  |||||||||||||    
T  11547737 ccctcattttttccttcgtttgtcaaataaat-cctgactgttaagtttaaccccaaatg 11547795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29219460 - 29219521
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||  ||||| |||||||||||||||||||||  ||||||||  |||||||||||||    
T  29219460 agtccctcaccttttcctccgtttgccaaataaatccc-aactgttaagtttaaccccaaatg 29219521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29332759 - 29332820
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||  ||||| |||||||||||||||||||||  ||||||||  |||||||||||||    
T  29332759 agtccctcaccttttcctccgtttgccaaataaatccc-aactgttaagtttaaccccaaatg 29332820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43034529 - 43034477
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| |||  |||||||| |||||| |||||||| ||||||||||    
T  43034529 aataaaacgtaccttttggtccctcactttttcctccgtttgtcaaataaatc 43034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 27847754 - 27847888
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccataga 118  Q
    |||||| | |||||||||||||||||||||||||||  ||| |||||  |||||||||||||| |||||| | | || |||||||| |||||||||||||    
T  27847754 gtcccttaatttttcttccgtttgccaaataaatcca-gacggttaagtttaaccccaaatgtatatggtgggccaagattatagatagtccaccataga 27847852  T
Q  119 ctttgataatttttaaaattttaaccattagatcttt 155  Q
    | ||  ||||||||  |||||||||| || |||||||    
T  27847853 ccttattaattttt-caattttaaccctttgatcttt 27847888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 13533275 - 13533166
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaac 143  Q
    |||||||||||  |||||||||| |||||  |||||||||||||| ||| ||||||||||| |||||||||||||| ||  ||||||||  |||||||||    
T  13533275 caaataaatcca-gactgttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaattttt-caattttaac 13533178  T
Q  144 cattagatcttt 155  Q
    |||| |||||||    
T  13533177 catttgatcttt 13533166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 42871153 - 42871270
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| |||  |||||||| |||||| |||||||||||||||||| ||||||||||||  ||||  ||||||||||| ||| ||  |||||||    
T  42871153 aataaaacgtacgttttggtccctcactttttcctccgtttgccaaataaat-cctgactgttaagtttaattccaaatgtctacggtggatcaacatta 42871251  T
Q  101 tagagagtccaccatagac 119  Q
    || | |||||||| |||||    
T  42871252 tatatagtccaccgtagac 42871270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 10168824 - 10168728
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaa-ccccaaatgtctatggttgactaacattatagagagtccacc 113  Q
    |||||||||  ||||| |||||||||||||||||||| |||| |||||  |||| ||||||||||||||||| ||| |||||||||||  |||||||    
T  10168824 agtccctcacattttcctccgtttgccaaataaatccatgacagttaactttaacccccaaatgtctatggtggaccaacattatagatggtccacc 10168728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 390275 - 390361
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||| ||||  ||||||||||| ||| |||||||||||||||||| ||||||||||||  |||||| ||||||||| ||||    
T  390275 aataaaacgtatattttggtccctcatttcttcctccgtttgccaaataaat-cctgactgttaagtttaacctcaaatgtctgtggt 390361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 34438528 - 34438612
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataatttttaaaattttaaccattagatct 153  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||| ||  ||||||||  ||||| ||||||| |||||    
T  34438528 ttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttt-taatttcaaccatttgatct 34438612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 53205524 - 53205387
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatag 117  Q
    ||||||||| |||||| |||||||||||||||||||| ||  ||||||  |||| | |||||||||||||| ||  |||||||||||  |||| || |||    
T  53205524 agtccctcactttttcctccgtttgccaaataaatccatgggtgttaactttaatctcaaatgtctatggtggatcaacattatagatggtccgccgtag 53205425  T
Q  118 actttgataatttttaaaattttaaccattagatcttt 155  Q
    |||||   ||||||   |||||||||| || |||||||    
T  53205424 actttatcaattttgttaattttaaccctttgatcttt 53205387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 13166810 - 13166742
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatg 86  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||  |||||  ||||||||||||    
T  13166810 agtccctcactttttcatccgtttgccaaataaatccttgactgttaagtttaacttcaaatgtctatg 13166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 2312540 - 2312462
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||| ||| ||||||||| |||||| |||||||||||||||||| | |||| |||||  |||||||||||||    
T  2312540 aataaaacgtacgtttaagtccctcactttttcctccgtttgccaaataaat-catgaccgttaagtttaaccccaaatg 2312462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 37884308 - 37884182
Alignment:
Q  28 tttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataa 127  Q
    |||||| ||||||||||||||||||||  |||||||||  |||||||||||| | ||||||  || || |||||| | |||||||||||||| ||  |||    
T  37884308 tttttcctccgtttgccaaataaatcca-gactgttaagtttaaccccaaatatatatggtgaaccaatattatatatagtccaccatagaccttattaa 37884210  T
Q  128 tttttaaaattttaaccattagatcttt 155  Q
     ||||  |||||||||| || |||||||    
T  37884209 attttccaattttaaccctttgatcttt 37884182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1188901 - 1188955
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccc 55  Q
    ||||||||||||||||  |||||||| |||||| |||||||||||||||||||||    
T  1188901 aataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatccc 1188955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 5591508 - 5591363
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttga--ctaacat 98  Q
    ||||||||  || ||| ||||||||| | |||  || ||||||||||||||||  || |||||||| |||||  |||||||||||||| ||    |||||    
T  5591508 aataaaactcacgttttagtccctcactcttttctctgtttgccaaataaatctttggctgttaaatttaacttcaaatgtctatggtagatcaaaacat 5591409  T
Q  99 tatagagagtccaccatagactttgataatttttaaaattttaacc 144  Q
    |||||| |||||||||||||| ||  ||||||||  ||||||||||    
T  5591408 tatagatagtccaccatagaccttattaatttttccaattttaacc 5591363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 44503733 - 44503608
Alignment:
Q  5 aaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaa-agttaaccccaaatgtctatggttgactaacattatag 103  Q
    ||||||||||||  |||||||| |||||| || |||||||||||||||||| ||| |||||   ||||||| |||||||||||||  || |||||| |||    
T  44503733 aaacgtacattttggtccctcactttttcctctgtttgccaaataaatccc-gaccgttaacttttaaccctaaatgtctatggtgaaccaacattgtag 44503635  T
Q  104 agagtccaccatagactttgataattt 130  Q
    |  ||||||| ||||| || |||||||    
T  44503634 atggtccaccgtagaccttaataattt 44503608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48126862 - 48127007
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttga--ctaacat 98  Q
    ||||||||  || ||| ||||||||| | |||  || ||||||||||||||||  || |||||||| |||||  |||||||||||||| ||    |||||    
T  48126862 aataaaactcacgttttagtccctcactcttttctctgtttgccaaataaatctttggctgttaaatttaacttcaaatgtctatggtagatcaaaacat 48126961  T
Q  99 tatagagagtccaccatagactttgataatttttaaaattttaacc 144  Q
    |||||| |||||||||||||| ||  ||||||||  ||||||||||    
T  48126962 tatagatagtccaccatagaccttattaatttttccaattttaacc 48127007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1587240 - 1587294
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccc 55  Q
    |||||||||||| |||  |||||||| |||||| |||||||||||||||||||||    
T  1587240 aataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatccc 1587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 11438608 - 11438530
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaaca 97  Q
    |||||||| |||||| ||| ||||| ||||||||| |||||| ||||  ||||||||||||||||| ||| ||| ||||    
T  11438608 gtccctcactttttcctccatttgctaaataaatctctgacttttaagtttaaccccaaatgtctacggtggaccaaca 11438530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 50546981 - 50547051
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccc-caaatgtctatgg 87  Q
    |||||||||| |||||  |||||||||||||||||||||  |||||||  ||||||| |||||||||||||    
T  50546981 agtccctcatcttttccaccgtttgccaaataaatccctacctgttaagtttaaccctcaaatgtctatgg 50547051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42810261 - 42810208
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||| ||| |||||||||  ||||| ||||||||||||||||||||    
T  42810261 aataaaacgtacttttaagtccctcacattttcctccgtttgccaaataaatcc 42810208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 53432163 - 53432207
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||||||| |||||  |||||||||||||||||||||    
T  53432163 caaataaatccctgacggttaagtttaaccccaaatgtctatggt 53432207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1831321 - 1831266
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccct 56  Q
    ||||||||||||||||  ||||||||||||||| ||| |||  |||||||||||||    
T  1831321 aataaaacgtacattttggtccctcattttttcctccatttttcaaataaatccct 1831266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 13165571 - 13165673
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagag-agtccaccatag 117  Q
    |||| |||| ||||| |||||||| ||||||||||| ||||||||||  |||||  ||||| |||||||| ||| ||| ||| ||||  |||||||||||    
T  13165571 gtccttcatcttttcctccgtttgtcaaataaatccttgactgttaagtttaacttcaaatttctatggtggaccaacctta-agagtggtccaccatag 13165669  T
Q  118 actt 121  Q
    ||||    
T  13165670 actt 13165673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 393678 - 393632
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaa 65  Q
    |||||||| |||||  ||||||||||||||||||||| |||||||||    
T  393678 gtccctcacttttttctccgtttgccaaataaatcccggactgttaa 393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 31965896 - 31965946
Alignment:
Q  4 aaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||| ||||||||  |||||||| |||||| ||||||||||||||||||||    
T  31965896 aaaatgtacattttggtccctcactttttcctccgtttgccaaataaatcc 31965946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 14524874 - 14524806
Alignment:
Q  35 tccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattataga 104  Q
    ||||||||| ||| |||||||| ||||||||  ||||||||||||||||||| | ||| || ||||||||    
T  14524874 tccgtttgcaaaa-aaatccctaactgttaagtttaaccccaaatgtctatgatggaccaatattataga 14524806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4871422 - 4871342
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgt 81  Q
    |||||||||||  ||| |||||| ||  ||||  |||||||| ||||||||||||||| ||||||  |||| |||||||||    
T  4871422 aataaaacgtatgtttaagtcccccacgtttttctccgtttgtcaaataaatccctgaatgttaactttaatcccaaatgt 4871342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10167494 - 10167538
Alignment:
Q  12 catttgagtccctcattttttcttccgtttgccaaataaatccct 56  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||    
T  10167494 cattttagtccctcatattttcctccgtttgtcaaataaatccct 10167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37882892 - 37882944
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| |||  ||||||||  ||||| |||||||||||||||||||    
T  37882892 aataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44501576 - 44501628
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||||| ||| ||||||||| |||||  || ||||||||||||||||    
T  44501576 aataaaacgtacgtttaagtccctcacttttttctctgtttgccaaataaatc 44501628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22049194 - 22049092
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||| |||  |||||||| |||||| || ||||| |||||||||||||| |||||||  |||||||||||||||||| || ||||| ||||     
T  22049194 aataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatccctg-ctgttaagtttaaccccaaatgtctattgtagactaccattt 22049096  T
Q  101 taga 104  Q
    ||||    
T  22049095 taga 22049092  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 325243 - 325157
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||||| |||  ||||||||  ||||| ||||||||||||||||||||| |||||||||  ||||| | |||||||||||||    
T  325243 aataaaacgtaccttttggtccctcaagttttcctccgtttgccaaataaatccc-gactgttaactttaactctaaatgtctatggt 325157  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 33174001 - 33173863
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagag-agtccaccata 116  Q
    |||||||||  ||||| || ||||||||||||||||| || |||||||  ||||||||||||||||||||| ||| ||| ||| ||||  ||| ||||||    
T  33174001 agtccctcaccttttcctctgtttgccaaataaatccttggctgttaagtttaaccccaaatgtctatggtggaccaacctta-agagtggtctaccata 33173903  T
Q  117 gactttgataa-tttttaaaattttaaccattagatcttt 155  Q
    |||||   ||| ||||| ||||||||||| || |||||||    
T  33173902 gacttcattaatttttttaaattttaaccgtttgatcttt 33173863  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22047790 - 22047843
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatcc 54  Q
    |||||||||||| |||  ||||||||||||||| ||||||||||||||||||||    
T  22047790 aataaaacgtacgttttggtccctcattttttcctccgtttgccaaataaatcc 22047843  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 32757926 - 32758014
Alignment:
Q  44 caaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacattatagagagtccaccatagactttgataattttt 132  Q
    ||||||||||| ||  ||||||  ||||||||||||||||||||| ||| |||||  |||| |||||||||||||| ||  ||||||||    
T  32757926 caaataaatccatgggtgttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttt 32758014  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 39603911 - 39603989
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||| |||  ||||||||  ||||| |||||||||||||||||| | ||||||||||  |||||||||||||    
T  39603911 aataaaacgtacgttttggtccctcaaattttcctccgtttgccaaataaat-catgactgttaagtttaaccccaaatg 39603989  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 22308840 - 22308770
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    |||||||||  ||||  |||||||||||||||||||| ||  ||||||  |||||||||||||||||||||    
T  22308840 agtccctcacattttgctccgtttgccaaataaatccatggttgttaagtttaaccccaaatgtctatggt 22308770  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 42510236 - 42510287
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    |||||| ||||||||||||||  ||||||||||| || ||||||||||||||    
T  42510236 ttaacctcaaatgtctatggtgcactaacattattgatagtccaccatagac 42510287  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 1102727 - 1102763
Alignment:
Q  52 tccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||  |||||||||||||||||||||    
T  1102727 tccctgactgttaactttaaccccaaatgtctatggt 1102763  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 124027 - 124113
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||||||||||  |||||||| |||||| || ||||||||||||||| ||| || |||||  |||||||||||| ||||||||    
T  124027 aataaaacgtacattttggtccctcactttttcctctgtttgccaaataaat-ccttacggttaagtttaaccccaaatatctatggt 124113  T

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Target: scaffold0031; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 125291 - 125213
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatg 80  Q
    |||||||||||| |||  |||||||| |||||| |||||||||||||||||| ||| || |||||  |||||||||||||    
T  125291 aataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaat-cctaacggttaagtttaaccccaaatg 125213  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 63172 - 63104
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatg 86  Q
    |||||||||  ||||  |||||||||||||||||||||||||||||||  |||||  ||||||||||||    
T  63172 agtccctcacatttttctccgtttgccaaataaatccctgactgttaagtttaacttcaaatgtctatg 63104  T

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Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 61926 - 61961
Alignment:
Q  18 agtccctcattttttcttccgtttgccaaataaatc 53  Q
    |||||||||| |||||||||||||||||||||||||    
T  61926 agtccctcatcttttcttccgtttgccaaataaatc 61961  T

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Target: scaffold0118 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43633 - 43558
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaa 77  Q
    |||||||||||  ||| ||||||||| |||||| |||||||||||||||| | |||||| |||||  ||||||||||    
T  43633 aataaaacgtatgtttaagtccctcactttttcctccgtttgccaaataagt-cctgacggttaagtttaaccccaa 43558  T

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Target: scaffold1251 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 1076 - 1025
Alignment:
Q  68 ttaaccccaaatgtctatggttgactaacattatagagagtccaccatagac 119  Q
    ||||||||||||||||||||| ||| |||||  |||| ||||||||||||||    
T  1076 ttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagac 1025  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 108571 - 108648
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaat 79  Q
    |||||||||||| |||   |||||||||||||| ||| |||||||||||||||| || | |||||  ||||||||||||    
T  108571 aataaaacgtacgttttgatccctcattttttcctccatttgccaaataaatccttg-cagttaagtttaaccccaaat 108648  T

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Target: scaffold0034; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 109803 - 109652
Alignment:
Q  1 aataaaacgtacatttgagtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggttgactaacatta 100  Q
    |||||||||||||||| ||||||||| |||||  ||  |||||||||| ||||||  ||| ||||  |||||  ||||||| |||||| ||| ||| |||    
T  109803 aataaaacgtacattttagtccctcacttttttctcaatttgccaaatgaatccc-aactattaactttaacttcaaatgtatatggtggaccaacctta 109705  T
Q  101 tagagagtccaccatagactttgataatttttaaaattttaaccattagatct 153  Q
     | | |||||| | ||||| ||  |||||||   ||||||||||||| |||||    
T  109704 aaaatagtccatcgtagaccttattaattttgttaattttaaccatttgatct 109652  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 127509 - 127578
Alignment:
Q  19 gtccctcattttttcttccgtttgccaaataaatccctgactgttaaagttaaccccaaatgtctatggt 88  Q
    ||||||||| ||| | |||||  | |||||||||||||||| |||||  |||||| ||||||||||||||    
T  127509 gtccctcatgtttgcctccgtcggtcaaataaatccctgacagttaactttaacctcaaatgtctatggt 127578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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