View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_low_18 (Length: 241)
Name: NF2611_low_18
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_low_18 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 13795879 - 13795695
Alignment:
| Q |
45 |
caaaccaaattctcattaaaatgca--gactttgcatctttaaaaaatgaagcaattatcaataaaataagtaagaaacttgcataaatttctagtgtga |
142 |
Q |
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| T |
13795879 |
caaaccaaattctcattaaaatgcacagaatttgcatctttaaaaa-tgaagcaattatcaataagataagtaagaaacttacataaatttctagtgtga |
13795781 |
T |
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| Q |
143 |
tctcactatagcatacaattcatgattt---------aagaccataaatcacaaatttactcattatgtgattactactaaaatgg |
219 |
Q |
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| T |
13795780 |
tctcactatagcatacaattcatgatttaaggcaacaaaggccacaaatcacagatttactcattatgtgatcactactaaaatgg |
13795695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13795950 - 13795907
Alignment:
| Q |
1 |
acatcagttaatgagacagcttacaaagacaccatatagactta |
44 |
Q |
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| T |
13795950 |
acatcagttaatgagacagcttacaaagacacaatatagactta |
13795907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 27583 - 27444
Alignment:
| Q |
89 |
atgaagcaattatcaataaaataagtaagaaacttgcataaatttctagtgtgatctcactatagcatacaattcatgatttaagac---------cata |
179 |
Q |
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| T |
27583 |
atgaagcaattatcaataagataagtaagaaacttacataaatttctagtgtgatctcactatagcatacaattcatgatttaaggcaacaaaggtcaca |
27484 |
T |
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| Q |
180 |
aatcacaaatttactcattatgtgattactactaaaatgg |
219 |
Q |
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| T |
27483 |
aatcacaaatttactcattatgtgatccctactaaaatgg |
27444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27637 - 27594
Alignment:
| Q |
1 |
acatcagttaatgagacagcttacaaagacaccatatagactta |
44 |
Q |
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| T |
27637 |
acatcaattaatgagacagcttacaaagacacaatatagactta |
27594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 35430662 - 35430620
Alignment:
| Q |
181 |
atcacaaatttactcattatgtgattactactaaaatgggttt |
223 |
Q |
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| T |
35430662 |
atcacaaatttagtcattatttgatcactactaaaatgggttt |
35430620 |
T |
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