View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_low_2 (Length: 539)
Name: NF2611_low_2
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 171 - 487
Target Start/End: Original strand, 46775630 - 46775946
Alignment:
| Q |
171 |
ccaaggtggtattggctaggtctatttgcaatttttgcacaatacctcacaattcaaagatattaaacatcaatgacaaatatcctccagctctcagann |
270 |
Q |
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| T |
46775630 |
ccaaggtggcattgggtaggtctatttgcaacttttgcacaatacctcacaatccaaagatattaaacatcaatgaaaaatatcctccagctctcagatt |
46775729 |
T |
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| Q |
271 |
nnnnnctttgaaaaggatacatggataaggactcgaagcagaactgaaaatcttcttctgtaattctcagaggaaaagaatggtacatggtctatatgtg |
370 |
Q |
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| T |
46775730 |
tttttctttgaaaaggatacatggataaggactcgaagcagaactgaaaatcttcttatgtaattctcagaggaaaagaatggtacatggtctatatgtg |
46775829 |
T |
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| Q |
371 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
470 |
Q |
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| T |
46775830 |
catgttgagttgtgagggagtctaaaatatagaggcacgttgagctatgaacaacaacatggttgacaccaaatatttacacaaaaccttaaaatattag |
46775929 |
T |
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| Q |
471 |
gtatgtaaatccccctc |
487 |
Q |
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| T |
46775930 |
gtatgtaaatccccctc |
46775946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 46775475 - 46775548
Alignment:
| Q |
16 |
caccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatacaaagaaatgctagattc |
89 |
Q |
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| T |
46775475 |
caccaaggaccaccacacgaacctcagcttaataaaggggaaacaaatttcaaatacaaggaaatgctagattc |
46775548 |
T |
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