View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2611_low_22 (Length: 224)

Name: NF2611_low_22
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2611_low_22
NF2611_low_22
[»] chr5 (3 HSPs)
chr5 (170-224)||(35105066-35105120)
chr5 (107-169)||(35104979-35105040)
chr5 (188-224)||(29948497-29948533)
[»] chr8 (1 HSPs)
chr8 (170-224)||(28621773-28621827)
[»] chr7 (2 HSPs)
chr7 (174-224)||(7578576-7578626)
chr7 (170-217)||(35339058-35339105)
[»] chr4 (1 HSPs)
chr4 (184-224)||(27360242-27360282)
[»] chr2 (1 HSPs)
chr2 (184-224)||(21289687-21289727)
[»] chr1 (1 HSPs)
chr1 (184-224)||(18640582-18640622)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 35105066 - 35105120
Alignment:
Q  170 taactcccatacgggaatggatggttagtgatccttaattactttgatcattcac 224  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  35105066 taactcccataagtgaatggatggttagtgatccttaattactttgatcattcac 35105120  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 35104979 - 35105040
Alignment:
Q  107 aacgaggcatatcctgatgcacatccatggaggagtgttgtgactaattaatttagtggatgt 169  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  35104979 aacgaggcatatccttatgcacatccatggaggagtgttatga-taattaacttagtggatgt 35105040  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 29948533 - 29948497
Alignment:
Q  188 ggatggttagtgatccttaattactttgatcattcac 224  Q
    ||||||||| || ||||||||||||||||||||||||    
T  29948533 ggatggttactggtccttaattactttgatcattcac 29948497  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 28621773 - 28621827
Alignment:
Q  170 taactcccatacgggaatggatggttagtgatccttaattactttgatcattcac 224  Q
    |||||| |||| | |||||||||||||||| |||||||||||||| |||||||||    
T  28621773 taactcacataagtgaatggatggttagtggtccttaattactttaatcattcac 28621827  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 7578576 - 7578626
Alignment:
Q  174 tcccatacgggaatggatggttagtgatccttaattactttgatcattcac 224  Q
    ||||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  7578576 tcccataagtgaatggatggtcagtggtccttaattactttgatcattcac 7578626  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 35339105 - 35339058
Alignment:
Q  170 taactcccatacgggaatggatggttagtgatccttaattactttgat 217  Q
    ||||||||||| | ||||||||||||| || |||||||||||||||||    
T  35339105 taactcccataagtgaatggatggttaatggtccttaattactttgat 35339058  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 27360242 - 27360282
Alignment:
Q  184 gaatggatggttagtgatccttaattactttgatcattcac 224  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  27360242 gaatagatggttagtggtccttaattactttgatcattcac 27360282  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 21289727 - 21289687
Alignment:
Q  184 gaatggatggttagtgatccttaattactttgatcattcac 224  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  21289727 gaatgtatgcttaatgatccttaattactttgatcattcac 21289687  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 18640622 - 18640582
Alignment:
Q  184 gaatggatggttagtgatccttaattactttgatcattcac 224  Q
    ||||| |||||||||| ||||||||| ||||||||||||||    
T  18640622 gaatgtatggttagtggtccttaattgctttgatcattcac 18640582  T

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