View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_low_4 (Length: 439)
Name: NF2611_low_4
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 40363150 - 40363566
Alignment:
| Q |
13 |
aatatatcaacattctggtacggtattacactacactctcactggtttcattcaaactctggttaaaatcttgcttagaaattagattatatctccatac |
112 |
Q |
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| T |
40363150 |
aatatatcaacattctggtacggtattacactacactctcattggtttcattcaaactctggttaaaatcttgcttagaaattagattatatctccatac |
40363249 |
T |
|
| Q |
113 |
tatttaattgannnnnnnctt------ataggtttctattccaaatggacaatgatggaaatttcgaatggttcttgggaagggagttccaaatagtatt |
206 |
Q |
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| T |
40363250 |
tatttaattgattttttttttttttttataggtttctattccaaatggacaatgatggaaatttcgaatggttcttgggaagggagttccaaatagtatt |
40363349 |
T |
|
| Q |
207 |
gtatatgggaaatattttgtcggggagggtaattgactataccaatgatgctgggtggttcgtagttcaatatgaagatggtcacacagacgaactttat |
306 |
Q |
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| T |
40363350 |
gtatatgggaaatattttgtcggggagggtaattgactataccaatgatgctgggtggttcgtagttcaatatgaagatggtcacacagacgaactttat |
40363449 |
T |
|
| Q |
307 |
tggaaggagttgttggaaattattttgtcctttggatgttacaattttccataagaattgggatcaatatttagggttattcagaataataagaaatcta |
406 |
Q |
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| T |
40363450 |
tggaaggagttgttggaaattattttgtcctttggatgttacgattttccataagaattggtgtcaacatttagggttattcagaataataagaaatcta |
40363549 |
T |
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| Q |
407 |
tttgtagatttgagaag |
423 |
Q |
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| T |
40363550 |
tttgtagatttgagaag |
40363566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 419
Target Start/End: Original strand, 40359256 - 40359392
Alignment:
| Q |
283 |
gatggtcacacagacgaactttattggaaggagttgttggaaattattttgtcctttggatgttacaattttccataagaa-ttgggatcaatatttagg |
381 |
Q |
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|||||| |||||| |||||| ||||| ||||||||||||| || ||| ||||||| ||| |||||||| | ||||||| |||| | | || | |||| |
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| T |
40359256 |
gatggtgacacaggagaacttcattggcaggagttgttggagtttgttt-gtccttttgatattacaattctgcataagacgttggcaccgatgtctagg |
40359354 |
T |
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| Q |
382 |
gttattcagaataataagaaatctatttgtagatttga |
419 |
Q |
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| T |
40359355 |
gttattcggaataataagaaatctattcgtagatttga |
40359392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 11346464 - 11346535
Alignment:
| Q |
290 |
acacagacgaactttattggaaggagttgttggaaattattttgtcctttggatgttacaattttccataaga |
362 |
Q |
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||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
11346464 |
acacagaagaacattattggcaggagttgttggaaatt-gtttgtcctttggattttacaatttcgcataaga |
11346535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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