View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2611_low_7 (Length: 381)
Name: NF2611_low_7
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 12075868 - 12076224
Alignment:
| Q |
17 |
aaaacactaatatttcagttccaatacactcctctctgagtgctttcagatggtaattctccaaatcctcgagtcaagcaaatcaccatctagaagcact |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12075868 |
aaaatactaatatttcagttccaatacactcctctct-agtgctttcagatggtgattctccaaatcctcgagtcaagcaaatcaccatctagaagcact |
12075966 |
T |
|
| Q |
117 |
cagagcagagtgtactggagctgaaatattagggttttttcttcgcaaaggatcgagggtacacgagttgtgtcattgaagttaagaatgagctaactgt |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12075967 |
cagagcagagtgtattggagctgaaatattagggttttttcttcacaaaggatcgagggtacaccagttgtgtcattgaagttaagaatgagctaactgt |
12076066 |
T |
|
| Q |
217 |
ccttggcct-aaatgaaaaaagtttaggaagttcccttttccacccctaaaccccgagctgttttcttgctgctcagggtttagggtttcattttgattg |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12076067 |
ccttggcctaaaatgaaaaaagtttaggaagtttccttttccacccctaaaccccgagctgttttcttgctgctcaaggtttaggatttcattttgattg |
12076166 |
T |
|
| Q |
316 |
taaaccaacaccattttcagccagcaaacagcggcaagaaaatcaccattttcatctc |
373 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12076167 |
taaaccaataccattttcagccagcaaacagcggcaagaaaatcaccattttcatctc |
12076224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 12076004 - 12075951
Alignment:
| Q |
17 |
aaaacactaatatttcagttccaatacactcctctctgagtgctttcagatggt |
70 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
12076004 |
aaaaccctaatatttcagctccaatacactctgctctgagtgcttctagatggt |
12075951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University