View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2612_high_6 (Length: 206)
Name: NF2612_high_6
Description: NF2612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2612_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 43470419 - 43470245
Alignment:
| Q |
16 |
aatatatagaggaatgatatacacataa-tataagaagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctacct |
114 |
Q |
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| T |
43470419 |
aatatatagaggaatcatatacacataaatataagaagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctacct |
43470320 |
T |
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| Q |
115 |
tatcccaacattgtgatctaatttgtctactttttgttaacacaagcattgacaagtaacaatcttctgatactt |
189 |
Q |
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| T |
43470319 |
tatcccaacattgtgatctaatttgtctactttttgttaacacaagcattgacaagtaacaatcttctgatactt |
43470245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 10642454 - 10642559
Alignment:
| Q |
60 |
ttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacattgtgatctaatttgtctactttttgttaacacaa |
159 |
Q |
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| T |
10642454 |
ttttaatcaaataagaattcattatagttcatgaatgtcagaggttaatctaccttatccctacactgtgatctagtttgtctactttttgttaacacaa |
10642553 |
T |
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| Q |
160 |
gcattg |
165 |
Q |
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| T |
10642554 |
gcattg |
10642559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 32713409 - 32713270
Alignment:
| Q |
23 |
agaggaatgatatacacataatataagaagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaa |
122 |
Q |
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| T |
32713409 |
agaggaatcatagacatataatataagatgat---tatttaaatcaaataagaattcattatagttcatgaatgtcagaggttaatctaccttattccta |
32713313 |
T |
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| Q |
123 |
cattgtgatctaatttgtctactttttgttaacacaagcattg |
165 |
Q |
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| T |
32713312 |
cactgtgatctagtttgtctactttttgttaatacaagcattg |
32713270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 23924185 - 23924090
Alignment:
| Q |
70 |
ataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacattgtgatctaatttgtctactttttgttaacacaagcattg |
165 |
Q |
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| T |
23924185 |
ataagaattcattatagttcatgaatgtcagaagttaatctaccttatccctacactgtgatctagtttgtctactttttgttaacacaagcattg |
23924090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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