View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2612_low_1 (Length: 849)

Name: NF2612_low_1
Description: NF2612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2612_low_1
NF2612_low_1
[»] chr3 (18 HSPs)
chr3 (18-438)||(26715253-26715672)
chr3 (18-434)||(26738492-26738908)
chr3 (507-839)||(26715741-26716073)
chr3 (27-434)||(26745533-26745943)
chr3 (18-419)||(26692934-26693335)
chr3 (18-415)||(26676907-26677304)
chr3 (18-415)||(26688786-26689183)
chr3 (18-419)||(26700080-26700481)
chr3 (507-823)||(26738981-26739307)
chr3 (44-302)||(26735263-26735521)
chr3 (181-358)||(26752633-26752810)
chr3 (516-590)||(26724385-26724459)
chr3 (783-827)||(53508360-53508404)
chr3 (783-825)||(27856301-27856343)
chr3 (780-821)||(12050555-12050596)
chr3 (777-826)||(38142660-38142709)
chr3 (780-825)||(42460885-42460930)
chr3 (780-825)||(46220799-46220844)
[»] chr4 (7 HSPs)
chr4 (780-825)||(37465639-37465684)
chr4 (780-825)||(2520936-2520981)
chr4 (780-826)||(43853599-43853645)
chr4 (780-825)||(6155130-6155175)
chr4 (780-821)||(29120286-29120327)
chr4 (780-821)||(45418673-45418714)
chr4 (748-825)||(48351062-48351138)
[»] chr8 (10 HSPs)
chr8 (780-844)||(18890604-18890668)
chr8 (780-825)||(8867944-8867989)
chr8 (788-843)||(471079-471134)
chr8 (780-818)||(428996-429034)
chr8 (780-822)||(28086717-28086759)
chr8 (780-825)||(15344447-15344492)
chr8 (780-825)||(15433512-15433557)
chr8 (780-825)||(15524816-15524861)
chr8 (780-825)||(29617179-29617224)
chr8 (780-825)||(41896656-41896701)
[»] chr7 (2 HSPs)
chr7 (780-825)||(24069301-24069346)
chr7 (778-826)||(25068200-25068249)
[»] chr6 (2 HSPs)
chr6 (780-825)||(9380161-9380206)
chr6 (780-825)||(528257-528302)
[»] chr2 (4 HSPs)
chr2 (780-844)||(10237124-10237188)
chr2 (780-826)||(25508976-25509022)
chr2 (780-825)||(1421823-1421868)
chr2 (780-825)||(6358789-6358834)
[»] chr5 (1 HSPs)
chr5 (780-815)||(11192525-11192560)
[»] chr1 (2 HSPs)
chr1 (791-825)||(13075573-13075607)
chr1 (780-825)||(15492427-15492472)
[»] scaffold0888 (1 HSPs)
scaffold0888 (784-825)||(1589-1630)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 26715253 - 26715672
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26715253 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttttgttatgttct 26715352  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26715353 ctgaaaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 26715452  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26715453 tgaggttgccggtattaagaagggaaagtgtcgagcg-tttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 26715551  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26715552 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacgtaccggataaaagcctgcggtgaatgtgccttcgggtgagactataacgtcttct 26715651  T
Q  418 tcatgtctctccactgacagg 438  Q
    |||||||||||||||||||||    
T  26715652 tcatgtctctccactgacagg 26715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 26738492 - 26738908
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26738492 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccacaaaatgaaaccatttgtgttatgttct 26738591  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26738592 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagaccaaacattaaactgtcctgcgtcggttaaaa 26738691  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  26738692 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgtttactggctgttcacgatttgccatccaaacaacggtagcattggtgaggttttt 26738791  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttct 417  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||||||||| ||||  || | |    
T  26738792 gtgtttttgagtgaaccatatggcgaatgaataagcattttcgcctacaggataaaagcccgcggtgaatgtgcctttgggtgagacaataaaatcattt 26738891  T
Q  418 tcatgtctctccactga 434  Q
    |||||||||||||||||    
T  26738892 tcatgtctctccactga 26738908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 507 - 839
Target Start/End: Original strand, 26715741 - 26716073
Alignment:
Q  507 cattttaattgttattgctggataatcttcttactatttgccatcatatataaacgtagaacggtaatgaaagaagtacgtgaaccgaaattacttgacc 606  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||     
T  26715741 cattttaattgttattgctgcataatcttcttactatttgccatcatatataaacgtagtacggtaatgaaagaagtacgtgaagcgaaattccttgact 26715840  T
Q  607 ttacccaagccacacggcattgacaatgtcacccaaccttgtattaatttgtcggaaataattttgnnnnnnnagaaaaacaaaacaatgttccgtcatt 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||| ||| ||||||    
T  26715841 ttacccaagccacacggcattgacaatgtcacccaaccttgtattaatttgtcggaaataattttgtttttttacaaaaacaaaacaatattcggtcatt 26715940  T
Q  707 caaattgatagaacacatcaattataataatatgatcaatgtgaatctgtcaacaaacttacgacacccaagtatacaacgaaaaaatgcttacaaataa 806  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26715941 caaattgatagaacacatcagttacaataatatgatcaatgtgaatctgtcaacaaactcacgacacccaagtatacaacgaaaaaatgcttacaaataa 26716040  T
Q  807 tacgataaaatctaaatcattatagtacctatg 839  Q
    || |||||||| |||||||||||||||||||||    
T  26716041 tatgataaaatataaatcattatagtacctatg 26716073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 434
Target Start/End: Original strand, 26745533 - 26745943
Alignment:
Q  27 catgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaa---tgaaaccatttgtgttatgttctctgaga 123  Q
    |||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||  ||||||| |   || || || | ||||| |||||||  |||    
T  26745533 catgtaccttgtgaaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatagtgttgtgttctcgaaga 26745632  T
Q  124 atgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaatgaggt 223  Q
    ||||||||||| || ||| |||||| ||||||||||| ||||  |||||  ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  26745633 atgagatttcctgtgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggt 26745732  T
Q  224 tgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgttt 323  Q
    |||| || || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||    
T  26745733 tgccagttttgagaagggaaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaacggtaggattggaaaggtttttgtgttt 26745832  T
Q  324 ttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttcttcatgt 423  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||||||||||| ||| | |||||||    
T  26745833 ttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaaacccgcggtgaatgtgcctttgggtgagactataatgtcattttcatgt 26745932  T
Q  424 ctctccactga 434  Q
    |||||||||||    
T  26745933 ctctccactga 26745943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 26693335 - 26692934
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| || |||| || |||    
T  26693335 aacaagtttcatgtgccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagctttgccacaaaacgaaaccaattttgttgtgctct 26693236  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    ||||| | ||||||||| ||||||||||||| |||||||||| |||||  |||||  ||||||||||||||||||| ||| ||||| ||||| ||||| |    
T  26693235 ctgaggacgagatttcctgtatcgtacaaaatcaactcaagtggtttggatgagttagtgtttgtggaccaaacatcaaaatgtcccgcgtcagttaata 26693136  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
      ||||| ||||| || |||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26693135 caaggttcccggttttgagaagggaaagtcttgagcattttccgttaacaggttggtcacgatttgccatccaaacaacggtagcgttggcgaggttttt 26693036  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||  ||||| | |||||  ||||||    
T  26693035 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaaacccgcagtgaatgtgccttttggtgatattataatatcttct 26692936  T
Q  418 tc 419  Q
    ||    
T  26692935 tc 26692934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 26676907 - 26677304
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||    
T  26676907 aacaagtttcatgtaccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagcttcgccacaaaatgaaaccatttgttttgcgttct 26677006  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    | |||||  || |||||  | ||||| |||| |||||||||| |||||  |||||  || ||||||||||| |||||  | |||||||| |||||||| |    
T  26677007 cggagaacaaggtttcctatgtcgtataaaaacaactcaagtggtttggatgagttagtatttgtggaccatacattggaatgtcctgcatcggttaaga 26677106  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
     |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | || |||||    
T  26677107 cgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagattttt 26677206  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtctt 415  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| || | |||||||||||| || ||||| |||| |||||| | ||||| |||||    
T  26677207 gtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtctt 26677304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 26689183 - 26688786
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||    
T  26689183 aacaagtttcatgtaccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagcttcgccacaaaatgaaaccatttgttttgcgttct 26689084  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    | |||||  || |||||  | || || |||| |||||||||| |||||  |||||  || ||||||||||| |||||  | |||||||| |||||||| |    
T  26689083 cggagaacaaggtttcctatgtcatataaaaacaactcaagtggtttggatgagttagtatttgtggaccatacattggaatgtcctgcatcggttaaga 26688984  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
     |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | || |||||    
T  26688983 cgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagattttt 26688884  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtctt 415  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| || | |||||||||||| || ||||| |||| |||||| | ||||| |||||    
T  26688883 gtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtctt 26688786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 26700080 - 26700481
Alignment:
Q  18 aacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttct 117  Q
    |||||||||||||||||  || |||  |||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||||||||| |||  ||||||    
T  26700080 aacaaggttcatgtacccagtcaaatcttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaacgaaaccatttatgtcttgttct 26700179  T
Q  118 ctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaa 217  Q
    || |||| ||| ||||| || |||||||||| ||||| ||||  ||||  ||||| ||| | ||| |||||||||||  ||   ||||| |||||||| |    
T  26700180 ctcagaacgaggtttcctgtttcgtacaaaaacaactgaagtgatttggatgagtttgtttctgttgaccaaacattggacacccctgcatcggttaata 26700279  T
Q  218 tgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggttttt 317  Q
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||    
T  26700280 caaggttgccggttttaagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagcgttgttgagattttt 26700379  T
Q  318 gtgtttttgagtgaaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttct 417  Q
    ||||||||| ||||||||||| || || |||||||||||||| || || || || || ||||| |||||||| ||||  ||||||||||||| ||| |||    
T  26700380 gtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtgagactataatgtcatct 26700479  T
Q  418 tc 419  Q
    ||    
T  26700480 tc 26700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 507 - 823
Target Start/End: Original strand, 26738981 - 26739307
Alignment:
Q  507 cattttaattgttattgctggataatcttcttactatttgccatcatatataaacgtagaacggtaatgaaagaagtacgtgaaccgaaattacttgacc 606  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||     
T  26738981 cattttaattgttattgctggataatctttttacgatttgccatcatatataaacgtagtacggtaatgaaagaagtacgtgaagcgaaattccttgact 26739080  T
Q  607 ttacccaagccacacggcattgacaatgtcacccaaccttgtattaatttgtcggaaataattttg----nnnnnnnagaaaaacaaaacaatgttccgt 702  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||           | | || ||||||||| ||||||    
T  26739081 ttacccaacccacacggcattgacaatgtcacccaaccttgcattaattggtctgaaataattttgtttttttttttacataagcaaaacaatattccgt 26739180  T
Q  703 cattcaaattgatagaacacatcaattataataatatgatcaatgtgaatctgtcaacaaacttacgacacccaagt-------atacaacgaaaaaatg 795  Q
    || |||||||||||||||||||||  || ||||||| ||||||||||||| |||||||||||||||||||| |||||       ||||||||  ||||||    
T  26739181 ca-tcaaattgatagaacacatcagatacaataatacgatcaatgtgaatatgtcaacaaacttacgacactcaagttaatagcatacaacgccaaaatg 26739279  T
Q  796 cttacaaataatacgataaaatctaaat 823  Q
    ||||||||||||| ||||||||||||||    
T  26739280 cttacaaataatatgataaaatctaaat 26739307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 44 - 302
Target Start/End: Original strand, 26735263 - 26735521
Alignment:
Q  44 tttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgta 143  Q
    ||||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||||||||| |||  |||||||| |||| ||| ||||| || |||||    
T  26735263 tttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaacgaaaccatttatgtcttgttctctcagaacgaggtttcctgtttcgta 26735362  T
Q  144 caaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaatgaggttgccggtattaagaagggaa 243  Q
    ||||| ||||| ||||  ||||  ||||   || || || |||||||| ||  ||   || || |||||||| |  || |||||||||||||||||||||    
T  26735363 caaaaacaactgaagtgctttggatgagctagttttagtcgaccaaacgttggacaacccagcatcggttaatactagattgccggtattaagaagggaa 26735462  T
Q  244 agtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagc 302  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  26735463 agtgttgagcgttttccattaactggttgatcacgatttgccatccaaacaacggtagc 26735521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 181 - 358
Target Start/End: Original strand, 26752633 - 26752810
Alignment:
Q  181 gtggaccaaacattaaactgtcctgcgtcggttaaaatgaggttgccggtattaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgat 280  Q
    |||||||||||| |  ||||  |||| || ||||| | |||||| || || || |||||||||||||| ||||||||||| |||||||||||||||||||    
T  26752633 gtggaccaaacaatggactgagctgcatctgttaagacgaggtttccagttttgagaagggaaagtgttgagcgttttccattaactggttggtcacgat 26752732  T
Q  281 ttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcatttt 358  Q
    ||||||||||||||| |||||  ||| |||| |||||||||||||| |||||||||||||| || |||||||||||||    
T  26752733 ttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcatttt 26752810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 590
Target Start/End: Original strand, 26724385 - 26724459
Alignment:
Q  516 tgttattgctggataatcttcttactatttgccatcatatataaacgtagaacggtaatgaaagaagtacgtgaa 590  Q
    ||||||||||||||||| |||||| |||||| ||| |||| ||||| ||| | | ||||||||||| ||||||||    
T  26724385 tgttattgctggataattttcttattatttgtcattatatctaaacatagtatgataatgaaagaaatacgtgaa 26724459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 783 - 827
Target Start/End: Complemental strand, 53508404 - 53508360
Alignment:
Q  783 caacgaaaaaatgcttacaaataatacgataaaatctaaatcatt 827  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  53508404 caacgacaaaatgcctacaaataatatgataaaatctaaatcatt 53508360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 825
Target Start/End: Complemental strand, 27856343 - 27856301
Alignment:
Q  783 caacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||    
T  27856343 caacggaaaaatgcctacaaataatatgataaaatctaaatca 27856301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 821
Target Start/End: Original strand, 12050555 - 12050596
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaa 821  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||    
T  12050555 atacaacgacaaaatgcttacaaataatatgataaaacctaa 12050596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 826
Target Start/End: Complemental strand, 38142709 - 38142660
Alignment:
Q  777 agtatacaacgaaaaaatgcttacaaataatacgataaaatctaaatcat 826  Q
    |||||||||| | ||||||| ||||||||||| ||||| |||||||||||    
T  38142709 agtatacaacaataaaatgcctacaaataatatgataagatctaaatcat 38142660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 42460930 - 42460885
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  42460930 atacaacaacaaaatgcctacaaataatatgataaaatctaaatca 42460885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 46220844 - 46220799
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  46220844 atacaacggtaaaatgcctacaaataatatgataaaatctaaatca 46220799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 37465684 - 37465639
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  37465684 atacaacgacaaaatgcttacaaataatatgataaaatctaaatca 37465639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 2520981 - 2520936
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||    
T  2520981 atacaacggcaaaatgcctacaaataatacgataaaatctaaatca 2520936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 780 - 826
Target Start/End: Complemental strand, 43853645 - 43853599
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatcat 826  Q
    ||||||| | |||||||| |||||||||| |||||||||||||||||    
T  43853645 atacaacaacaaaatgctgacaaataatatgataaaatctaaatcat 43853599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 6155130 - 6155175
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  6155130 atacaacgacaaaatgcctacaaataatatgatagaatctaaatca 6155175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 821
Target Start/End: Original strand, 29120286 - 29120327
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaa 821  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  29120286 atacaacgacaaaatgcctacaaataatatgataaaatctaa 29120327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 821
Target Start/End: Complemental strand, 45418714 - 45418673
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaa 821  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  45418714 atacaacgacaaaatgcctacaaataatatgataaaatctaa 45418673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 825
Target Start/End: Original strand, 48351062 - 48351138
Alignment:
Q  748 tgaatctgtcaacaaacttacgacacccaagtatacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||| | |||||||| || ||| ||||| ||||||||| ||||||| ||||||||| | |||| |||||||||||    
T  48351062 tgaatctttgaacaaactcacaacatccaag-atacaacgacaaaatgcatacaaataacatgatacaatctaaatca 48351138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 780 - 844
Target Start/End: Original strand, 18890604 - 18890668
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatcattatagtacctatgcttct 844  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||  ||| |||||||| ||||    
T  18890604 atacaacgacaaaatgcctacaaataatatgataaaatctaaatcaccataatacctatgtttct 18890668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 8867989 - 8867944
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  8867989 atacaacgacaaaatgcctacaaataatatgataaaatctaaatca 8867944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 843
Target Start/End: Original strand, 471079 - 471134
Alignment:
Q  788 aaaaaatgcttacaaataatacgataaaatctaaatcattatagtacctatgcttc 843  Q
    ||||||||| ||||||||||| ||||||||||||||||| | | |||| |||||||    
T  471079 aaaaaatgcctacaaataatatgataaaatctaaatcatcagaatacccatgcttc 471134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 780 - 818
Target Start/End: Original strand, 428996 - 429034
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatc 818  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  428996 atacaacgaaaaaatgcttataaataatatgataaaatc 429034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 780 - 822
Target Start/End: Original strand, 28086717 - 28086759
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaa 822  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||    
T  28086717 atacaacgacaaaatgcctacaaataatatgataaaatctaaa 28086759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 15344492 - 15344447
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  15344492 atacaacgacaaaatgcctacaaataatatgatataatctaaatca 15344447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 15433557 - 15433512
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  15433557 atacaacgacaaaatgcctacaaataatatgatataatctaaatca 15433512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 15524861 - 15524816
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  15524861 atacaacgacaaaatgcctacaaataatatgatataatctaaatca 15524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 29617179 - 29617224
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  29617179 atacaacaacaaaatgcctacaaataatatgataaaatctaaatca 29617224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 41896701 - 41896656
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||||||||    
T  41896701 atacaacgacaaaatgcctacaaataatatgatgaaatctaaatca 41896656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 24069301 - 24069346
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  24069301 atacaacgataaaatgcctacaaataatatgataaaatctaaatca 24069346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 778 - 826
Target Start/End: Complemental strand, 25068249 - 25068200
Alignment:
Q  778 gtatacaacgaaaaaatgcttac-aaataatacgataaaatctaaatcat 826  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  25068249 gtatacaacgacaaaatgcttactaaataatatgataaaatctaaatcat 25068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 9380206 - 9380161
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  9380206 atacaacgacaaaatgcatacaaataatatgataaaatctaaatca 9380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 528257 - 528302
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||||||    
T  528257 atacaacgacaaaatacctacaaataatatgataaaatctaaatca 528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 780 - 844
Target Start/End: Original strand, 10237124 - 10237188
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatcattatagtacctatgcttct 844  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||||||||| | | |||| ||||||||    
T  10237124 atacaacgacaaaatgcctacaaataatatgatgaaatctaaatcatcagaatacccatgcttct 10237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 780 - 826
Target Start/End: Original strand, 25508976 - 25509022
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatcat 826  Q
    ||||||||  ||||||| |||||||||||||||||||||||| ||||    
T  25508976 atacaacggcaaaatgcctacaaataatacgataaaatctaagtcat 25509022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 1421868 - 1421823
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||    
T  1421868 atacaacgacaaaatgcctacaaataatatgataaaacctaaatca 1421823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Original strand, 6358789 - 6358834
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||||||    
T  6358789 atacaacgacaaaatacgtacaaataatatgataaaatctaaatca 6358834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 815
Target Start/End: Complemental strand, 11192560 - 11192525
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaa 815  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11192560 atacaacgacaaaatgcttacaaataatacgataaa 11192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 791 - 825
Target Start/End: Original strand, 13075573 - 13075607
Alignment:
Q  791 aaatgcttacaaataatacgataaaatctaaatca 825  Q
    |||||||||||||||||| ||||||||||||||||    
T  13075573 aaatgcttacaaataatatgataaaatctaaatca 13075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 15492472 - 15492427
Alignment:
Q  780 atacaacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  15492472 atacaacggtaaaatgcatacaaataatatgataaaatctaaatca 15492427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 784 - 825
Target Start/End: Original strand, 1589 - 1630
Alignment:
Q  784 aacgaaaaaatgcttacaaataatacgataaaatctaaatca 825  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  1589 aacgataaaatgcctacaaataatatgataaaatctaaatca 1630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University