View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2612_low_2 (Length: 467)

Name: NF2612_low_2
Description: NF2612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2612_low_2
NF2612_low_2
[»] chr1 (6 HSPs)
chr1 (27-299)||(9623129-9623401)
chr1 (323-467)||(9623520-9623664)
chr1 (364-464)||(39489638-39489736)
chr1 (368-422)||(37492660-37492714)
chr1 (366-422)||(4692955-4693011)
chr1 (376-416)||(17796262-17796302)
[»] chr3 (3 HSPs)
chr3 (366-422)||(34430449-34430505)
chr3 (340-420)||(20196365-20196446)
chr3 (379-431)||(32278091-32278143)
[»] chr6 (2 HSPs)
chr6 (365-422)||(8416279-8416336)
chr6 (340-419)||(17113352-17113431)
[»] chr7 (5 HSPs)
chr7 (377-436)||(35120150-35120209)
chr7 (355-422)||(29465923-29465992)
chr7 (376-422)||(4038879-4038925)
chr7 (394-435)||(31231969-31232010)
chr7 (376-436)||(40915246-40915306)
[»] chr8 (8 HSPs)
chr8 (368-414)||(11540016-11540062)
chr8 (357-423)||(30698082-30698149)
chr8 (352-422)||(6291925-6291995)
chr8 (377-411)||(6845457-6845491)
chr8 (379-437)||(9712188-9712246)
chr8 (376-426)||(24810541-24810591)
chr8 (339-411)||(13148796-13148868)
chr8 (364-409)||(40605187-40605232)
[»] chr4 (7 HSPs)
chr4 (379-432)||(11697392-11697445)
chr4 (344-432)||(54541965-54542054)
chr4 (376-439)||(53741204-53741267)
chr4 (368-422)||(51205656-51205710)
chr4 (377-422)||(8998602-8998647)
chr4 (368-411)||(31361367-31361410)
chr4 (382-422)||(52810189-52810229)
[»] chr2 (2 HSPs)
chr2 (366-421)||(5878105-5878160)
chr2 (387-435)||(34400253-34400301)
[»] chr5 (2 HSPs)
chr5 (377-439)||(11443840-11443902)
chr5 (376-420)||(513926-513970)
[»] scaffold0041 (1 HSPs)
scaffold0041 (376-436)||(57789-57849)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 299
Target Start/End: Original strand, 9623129 - 9623401
Alignment:
Q  27 taacaaatttgtcaaacctaacaatttatctaagattttaattttgtccctactggtttcacaatggagtattttaaatggatcctaaaatatcttttta 126  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  9623129 taacaaatttgtcaaacctaacaatttttgtaagattttaattttgtccctaccggtttcacaatggagtatttcaaatggatcctcaaatatcttttta 9623228  T
Q  127 ctatagatagcatatttgtatgtcatgataatggatttatttgacgtgacaaacttaatgtatcaacatagctataggatatcattgcattaacattaca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9623229 ctatagatagcatatttgtatgtcatgataatggatttatttgacgtgacaaacttaatgtatcaacatagctatagtatatcattgcattaacattaca 9623328  T
Q  227 ctatcattgcataattgctacaaaattttgaggtgagtgagatgttgaaacaatgcgtaccttacttctggag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9623329 ctatcattgcataattgctacaaaattttgaggtgagtgagatgttgaaacaatgcgtaccttacttctggag 9623401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 323 - 467
Target Start/End: Original strand, 9623520 - 9623664
Alignment:
Q  323 gtactcatgaagtctcattgaatatgtattcatcatctaataatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9623520 gtactcatgaagtctcattgaatatgtatccatcatctaataatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgtgaaa 9623619  T
Q  423 acaattttacctacgggtatcgatatccaatcaaactacaaaata 467  Q
    ||||||||||||||||||||||||| |||| ||||| | ||||||    
T  9623620 acaattttacctacgggtatcgatacccaaccaaacaataaaata 9623664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 39489736 - 39489638
Alignment:
Q  364 aatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctacgggtatcgatatccaatcaaactacaa 463  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |||||  ||||||  ||  |||||||||| | |||||||||| |||    
T  39489736 aatcaatatcatgtcatatttt-atattaatttattttaaaataaattcaaatattaaataaatttt-gcttggggtatcgattttcaatcaaactccaa 39489639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 37492660 - 37492714
Alignment:
Q  368 aatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    ||||||| |||||||||| | |||||||||| |||||||||||| ||||||||||    
T  37492660 aatgtcatgtcatatttttacattaatttattttaaaataaatttaaatgttaaa 37492714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 4693011 - 4692955
Alignment:
Q  366 tcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    |||||| || |||||||||  || ||||||||| |||||||||||| ||||||||||    
T  4693011 tcaatgacatgtcatatttgcatcttaatttattttaaaataaatttaaatgttaaa 4692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 17796262 - 17796302
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaat 416  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  17796262 gtcacattttaatattaatttattttaaaataaattcaaat 17796302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 34430449 - 34430505
Alignment:
Q  366 tcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34430449 tcaatgtcatgtcatatttttatattaatttatattaaaataaatttaaatgttaaa 34430505  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 20196365 - 20196446
Alignment:
Q  340 ttgaatatgtattcatcatctaat-aatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgtta 420  Q
    |||| |||||| ||||| || ||| ||| ||| ||| ||||||||||||||||| ||||| ||||||||||| || ||||||    
T  20196365 ttgagtatgtagtcatcttccaatcaattaatatcatgtcatattttgatattattttattttaaaataaatccatatgtta 20196446  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 32278091 - 32278143
Alignment:
Q  379 atattttgatattaatttatattaaaataaattcaaatgttaaaacaatttta 431  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||  |||||||    
T  32278091 atatttttatattgatttattttaaaataaattcaaatattaaacaaatttta 32278143  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 8416279 - 8416336
Alignment:
Q  365 atcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    |||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8416279 atcaatgtaatgtcatatttttatattaatttataataaaataaattcaaatgttaaa 8416336  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 17113352 - 17113431
Alignment:
Q  340 ttgaatatgtattcatcatctaat-aatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgtt 419  Q
    ||||||||||||| |||||||||| |||||| |||| | |||||||| |||||||||||| || ||||||||| |||||||    
T  17113352 ttgaatatgtatttatcatctaatcaatcaaggtcatgacatatttt-atattaatttatttttaaataaattaaaatgtt 17113431  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 436
Target Start/End: Complemental strand, 35120209 - 35120150
Alignment:
Q  377 tcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctac 436  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||  ||||||||||||    
T  35120209 tcatatttttatattaatttattttaaaataaatttaaatgttaaataaattttacctac 35120150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 29465992 - 29465923
Alignment:
Q  355 tcatctaat-aatcaatgtcacgtcatattttgatattaattt-atattaaaataaattcaaatgttaaa 422  Q
    ||||||||| ||||||| ||| |||||||||| |||||||||| || |||||||||||| ||||||||||    
T  29465992 tcatctaatcaatcaatatcatgtcatattttcatattaattttattttaaaataaatttaaatgttaaa 29465923  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 4038879 - 4038925
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    |||||||||| ||||||||| || |||| ||||||||||||||||||    
T  4038879 gtcatatttttatattaattcattttaatataaattcaaatgttaaa 4038925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 31231969 - 31232010
Alignment:
Q  394 tttatattaaaataaattcaaatgttaaaacaattttaccta 435  Q
    ||||| |||||||||||||||||| |||| ||||||||||||    
T  31231969 tttattttaaaataaattcaaatgctaaaccaattttaccta 31232010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 40915246 - 40915306
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctac 436  Q
    |||||||||| |||| ||||||| |||||||||||| |||| || ||  ||||||||||||    
T  40915246 gtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaattttacctac 40915306  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 11540016 - 11540062
Alignment:
Q  368 aatgtcacgtcatattttgatattaatttatattaaaataaattcaa 414  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  11540016 aatgtcatgtcatatttttatattaatttatattaaaataaattcaa 11540062  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 30698082 - 30698149
Alignment:
Q  357 atctaata-atcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaaa 423  Q
    |||||||| |||| ||||| |||||||||| || ||||||||| |||||||||||| |||||||||||    
T  30698082 atctaatagatcattgtcatgtcatattttaattttaatttattttaaaataaatttaaatgttaaaa 30698149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 6291995 - 6291925
Alignment:
Q  352 tcatcatctaat-aatcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    |||||||| ||| ||||||||||| || ||||||| |||||||||||| ||||||| |||| ||||||||||    
T  6291995 tcatcatccaatcaatcaatgtcatgtaatatttttatattaatttattttaaaat-aatttaaatgttaaa 6291925  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 6845457 - 6845491
Alignment:
Q  377 tcatattttgatattaatttatattaaaataaatt 411  Q
    ||||||||| |||||||||||||||||||||||||    
T  6845457 tcatatttttatattaatttatattaaaataaatt 6845491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 9712246 - 9712188
Alignment:
Q  379 atattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctacg 437  Q
    ||||||| ||| |||||||| |||||||||||| ||||||||||  |||||| ||||||    
T  9712246 atatttttataataatttattttaaaataaattaaaatgttaaacaaattttgcctacg 9712188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 24810541 - 24810591
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaa 426  Q
    |||||||||| || |||| |||| |||||||||| ||||||||||||||||    
T  24810541 gtcatatttttattttaacttattttaaaataaagtcaaatgttaaaacaa 24810591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 13148868 - 13148796
Alignment:
Q  339 attgaatatgtattcatcatctaat-aatcaatgtcacgtcatattttgatattaatttatattaaaataaatt 411  Q
    |||| |||||||| ||||| | ||| ||||||||||| |||||||||| | |||||||||| ||||||||||||    
T  13148868 attgtatatgtatccatcacccaatcaatcaatgtcaagtcatattttta-attaatttattttaaaataaatt 13148796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 40605187 - 40605232
Alignment:
Q  364 aatcaatgtcacgtcatattttgatattaatttatattaaaataaa 409  Q
    |||||||||| | ||||||||| |||||||||||| ||||||||||    
T  40605187 aatcaatgtcgcatcatatttttatattaatttattttaaaataaa 40605232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 11697392 - 11697445
Alignment:
Q  379 atattttgatattaatttatattaaaataaattcaaatgttaaaacaattttac 432  Q
    ||||||| |||||||||||| |||||||||||||||||||||||  ||||||||    
T  11697392 atatttttatattaatttattttaaaataaattcaaatgttaaacaaattttac 11697445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 54542054 - 54541965
Alignment:
Q  344 atatgtattcatcatctaataat-caatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttac 432  Q
    ||||| ||||||| |||||| || |||||||| ||||| |||| || ||||||||| ||||||||||||||||| |||||  ||||||||    
T  54542054 atatgcattcatcttctaattattcaatgtcatgtcattttttcattttaatttattttaaaataaattcaaatattaaacaaattttac 54541965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 53741267 - 53741204
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctacggg 439  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||   |||||| ||||||||    
T  53741267 gtcatatttttatattaatttatattaaaataaattcagaagttaaccaaattttgcctacggg 53741204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 51205656 - 51205710
Alignment:
Q  368 aatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    ||||||| || ||||||| |||||||||||| ||||||||||||||||| |||||    
T  51205656 aatgtcatgttatatttttatattaatttattttaaaataaattcaaatattaaa 51205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 8998647 - 8998602
Alignment:
Q  377 tcatattttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||    
T  8998647 tcatatttttatattaatttattttaaattaaattcaaatgttaaa 8998602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 31361410 - 31361367
Alignment:
Q  368 aatgtcacgtcatattttgatattaatttatattaaaataaatt 411  Q
    ||||||| |||| ||||| |||||||||||||||||||||||||    
T  31361410 aatgtcatgtcacattttaatattaatttatattaaaataaatt 31361367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 52810229 - 52810189
Alignment:
Q  382 ttttgatattaatttatattaaaataaattcaaatgttaaa 422  Q
    |||| ||||||||||||||||||||||||| |||| |||||    
T  52810229 tttttatattaatttatattaaaataaatttaaattttaaa 52810189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 5878160 - 5878105
Alignment:
Q  366 tcaatgtcacgtcatattttgatattaatttatattaaaataaattcaaatgttaa 421  Q
    ||||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||    
T  5878160 tcaatgtcatgttatatttttatattaatttatcttaaaataaattcaaattttaa 5878105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 34400301 - 34400253
Alignment:
Q  387 atattaatttatattaaaataaattcaaatgttaaaacaattttaccta 435  Q
    |||||||||||| |||||||||||| ||| ||||||  |||||||||||    
T  34400301 atattaatttattttaaaataaatttaaaagttaaacaaattttaccta 34400253  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 11443902 - 11443840
Alignment:
Q  377 tcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctacggg 439  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||  |||||| || |||||    
T  11443902 tcatatttttatattaatttattttaaaataaatttaaatgttaaacaaattttgccaacggg 11443840  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 513926 - 513970
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgtta 420  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||    
T  513926 gtcatatttttatattaatttattttaaaataaatttaaatgtta 513970  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 57849 - 57789
Alignment:
Q  376 gtcatattttgatattaatttatattaaaataaattcaaatgttaaaacaattttacctac 436  Q
    |||||||||| |||| ||||||| |||||||||||| |||| || ||  ||||||||||||    
T  57849 gtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaattttacctac 57789  T

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