View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2612_low_5 (Length: 239)
Name: NF2612_low_5
Description: NF2612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2612_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 38147591 - 38147378
Alignment:
| Q |
17 |
aataattcacttgcagttaagctatgcttctcttcaacagcatcaagtgcagatatataagacttatcttgagcttcagctttgtggataaaatcataca |
116 |
Q |
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| T |
38147591 |
aataattcacttgcagttaagctatgcttctcttcaacagcatcaagtgcagatatataagacttatcctgagcttcagccttgtggatgagatcataca |
38147492 |
T |
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| Q |
117 |
tcatatctgttacttttgacatagcagaaaccactaccaattttctctcagaatcatcattgattattacatctgcaacattatttattcttgctgaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38147491 |
tcatatctgttacttttgacatagcagaaaccactaccaattttctctcagaatcatcattgattattacatctgcaacattatttattcttgctgaact |
38147392 |
T |
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| Q |
217 |
tcccacacaggttc |
230 |
Q |
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||||||||| |||| |
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| T |
38147391 |
tcccacacatgttc |
38147378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 35098323 - 35098515
Alignment:
| Q |
38 |
ctatgcttctcttcaacagcatcaagtgcagatatataagacttatcttgagcttcagctttgtggataaaatcatacatcatatctgttacttttgaca |
137 |
Q |
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||||||||||| ||||||||| | | |||||||||||||| ||| | | || ||| || | ||||| ||||||||||||||| || || || |||| |
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| T |
35098323 |
ctatgcttctccaaaacagcatccaaggaagatatataagactcatcacgcgattgagccttattgataagatcatacatcatatccgtcaccttagaca |
35098422 |
T |
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| Q |
138 |
tagcagaaaccactaccaattttctctcagaatcatcattgattattacatctgcaacattatttattcttgctgaacttcccacacaggttc |
230 |
Q |
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| T |
35098423 |
ttgcagaaacaaccaccaatttcctctcggaatcatcattcaaaactatgtctccaacattctttattctttgtgagcttcccatacaagttc |
35098515 |
T |
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