View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2613_high_4 (Length: 339)
Name: NF2613_high_4
Description: NF2613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2613_high_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 46632877 - 46632556
Alignment:
| Q |
18 |
agttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttg |
117 |
Q |
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| T |
46632877 |
agttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttg |
46632778 |
T |
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| Q |
118 |
cctctcaaatgaatcaggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtag |
217 |
Q |
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| T |
46632777 |
cctctcaaatgaatcaggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtag |
46632678 |
T |
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| Q |
218 |
tcataggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgcttt |
317 |
Q |
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| T |
46632677 |
tcataggacatttgttctgcataagatggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgcttt |
46632578 |
T |
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| Q |
318 |
gagctgtactgaagcaatcctc |
339 |
Q |
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| T |
46632577 |
gagctgtactgaagcaatcctc |
46632556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 15507147 - 15506983
Alignment:
| Q |
41 |
tgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattctccgccgactcagttgcctctcaaatgaatcaggccttt |
140 |
Q |
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| T |
15507147 |
tgtgaagatgacctcatcatcctcactggccttggaacatttcttccttccacagaagctcttcgccgactcggttgtctctcgtacatgtccggccttt |
15507048 |
T |
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| Q |
141 |
gttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttgga |
205 |
Q |
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| T |
15507047 |
gcttcggtgcactttgtgatctgactttagctcttgatgattctgtgttagccatgtaatttgga |
15506983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 45768313 - 45768377
Alignment:
| Q |
135 |
gcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaa |
199 |
Q |
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| T |
45768313 |
gcctttgtcttggtgcactttgtgatctaaccttagctctagaagattcagtgtttgccatgtaa |
45768377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 42635355 - 42635284
Alignment:
| Q |
133 |
aggcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttgg |
204 |
Q |
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| T |
42635355 |
aggcctttgttttggtgcactcagagatctaactttggcctttgccgactctgtataagccatgtaacttgg |
42635284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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