View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2613_low_1 (Length: 753)
Name: NF2613_low_1
Description: NF2613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2613_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 34 - 736
Target Start/End: Complemental strand, 42342756 - 42342054
Alignment:
| Q |
34 |
gactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaagaagatgcacttatgcatcaag |
133 |
Q |
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| T |
42342756 |
gactggttttgactttagtatattcttcttggttcttgatctgcatcatgtgcacttttctcagttttaactacacaagaagatgcacttatgcatcaag |
42342657 |
T |
|
| Q |
134 |
gatttcactctttaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttttgctttctgagctttcgtttga |
233 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342656 |
gatttcactctctaccatgtgatgttttcttcacagatgacaacttgtattccttcttaagcctctcagtttctcttttgctttctgagctttcgtttga |
42342557 |
T |
|
| Q |
234 |
actctcacgtttgtttcctctaaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttgattcaaaataaaaggagtttta |
333 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342556 |
actctcacgtttgtttcctctgaacactgcatgagataatcataagacagtaatttagatttgatttcaatccatttgattcaaaataaaaggagtttta |
42342457 |
T |
|
| Q |
334 |
atgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttctcctcctctcgagttcagcctgaagaataaaagaagca |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42342456 |
atgtctctaaattttctatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagca |
42342357 |
T |
|
| Q |
434 |
tgatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgaga |
533 |
Q |
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| T |
42342356 |
tgatccttgtcagtataattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgaga |
42342257 |
T |
|
| Q |
534 |
attctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcnnnnnnnnnnnnnnnnnntgtgtcacaaaggagtcacattaacaa |
633 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42342256 |
attctcttctcttaattgattcagttctgcttctaattcaactgtataggcctgcaaaagcaacaaagaaaaatgtgtcacaaaggagtcacattaacaa |
42342157 |
T |
|
| Q |
634 |
tataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaat |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342156 |
tataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaat |
42342057 |
T |
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| Q |
734 |
gtt |
736 |
Q |
| |
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||| |
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| T |
42342056 |
gtt |
42342054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 574
Target Start/End: Original strand, 9522495 - 9522550
Alignment:
| Q |
519 |
ctgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaa |
574 |
Q |
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|||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||| |
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| T |
9522495 |
ctgtttcagtcaagaattatcttatcttaactgattcaattctgcttctaattcaa |
9522550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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