View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2613_low_2 (Length: 458)
Name: NF2613_low_2
Description: NF2613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2613_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 50153197 - 50152765
Alignment:
| Q |
19 |
cgaatcccctcgaaacaatcaaagaggaatagtgtaggcagcgagggcaaaacggacagaaggccataaattcattttctaatataaaaaacacagtatg |
118 |
Q |
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| T |
50153197 |
cgaatcccctcgaaacaatcaaagaggaatagtgtaggcagcgagggcaaaacggacagaaggccataaattcattttgtaatataaaaaacacagtatg |
50153098 |
T |
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| Q |
119 |
ttatcagaaacctcataaaaacaaagtatattaccagaaacttcatcaaagatatatagtcctactgtgtaagaagcaattaaggagaaaaaatctaagc |
218 |
Q |
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| T |
50153097 |
ttaccagaaacctcgtaaaaacaaagtatattaccagaaacttcatcaaagatatatagtcatactgtttaagaagcaattaaggagaaaaaatctaagc |
50152998 |
T |
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| Q |
219 |
aatgaggaagtagcaactgaattatgttagggcaagaattctgagtcctttgcaatagaataaatgaatcatttcatagctttgtgccaaacttctaaga |
318 |
Q |
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| T |
50152997 |
aatgaggaagtagcaactgaattatgttagggcaagaattttgagtcctttgcaatagaataaatgaatcatttcatatctttgtgccaaacttctaaga |
50152898 |
T |
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| Q |
319 |
gggtacaaacactcactatagtgttcatacattagtgag----tatgtaacaccgacacctttgatcgaactgtccgatgttcgacgcatgttggtatct |
414 |
Q |
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| T |
50152897 |
gggtacaaacactcactatagtgttcatacattagtgagtatctatgtaacaccgaca-ctttgatcgaactgtccggtgtccgatgcatgttggtatct |
50152799 |
T |
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| Q |
415 |
ccgacatgacattgacacatgtgactacattcat |
448 |
Q |
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| T |
50152798 |
ccgacatgacattgacacatgtgactacattcat |
50152765 |
T |
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