View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2613_low_3 (Length: 415)
Name: NF2613_low_3
Description: NF2613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2613_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 30317404 - 30317792
Alignment:
| Q |
12 |
aagaatataatacatccaaagagcaagagttattaatggtgagtttttattttgaaaataaaattgacaaagaaaaagaacatgagtnnnnnnnnntagt |
111 |
Q |
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| T |
30317404 |
aagaacataatacatccaaagagcaagagttattaatggtgagtttttattttgaaaataaaattgacagagaaaaagaacatgagtaaaaaaaaatagt |
30317503 |
T |
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| Q |
112 |
agtggattgttatgtaattttagtggttattagttatcttaagtttatagtgtatatatgtatggatggatttgttgtttcaatttcttgagaatattat |
211 |
Q |
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| T |
30317504 |
agtggattgttatgtaattttagtggttattagttatcttaagtttatagtgtatatatatatggatggatttgttgtttcaatttcttgagaatattat |
30317603 |
T |
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| Q |
212 |
acattataccttacattctagttattttccttccatgaaattaggaacaagcaataccaagtactattgtatccatttatatggacttcatttcatctag |
311 |
Q |
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| T |
30317604 |
acattataccttacattctagttattttcctt-caggaaattaggaacaagcaataccaagtactattgtatccattcatatggacttcatttcatctag |
30317702 |
T |
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| Q |
312 |
aaatgacctgtt-aaaaattaactaaatttagcaaactttagaaaggtttacatatttacatgttctttatactatcattcccattgtca |
400 |
Q |
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| T |
30317703 |
aaatgacctgttaaaaaattaactaaatttagcaaactttagaaaggtttacatatttacatgttctttatactatcattcccattgtca |
30317792 |
T |
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