View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2614_high_2 (Length: 324)

Name: NF2614_high_2
Description: NF2614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2614_high_2
NF2614_high_2
[»] chr3 (2 HSPs)
chr3 (9-324)||(51417696-51418011)
chr3 (33-111)||(51412871-51412949)
[»] chr7 (1 HSPs)
chr7 (56-324)||(29323355-29323615)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 51418011 - 51417696
Alignment:
Q  9 gaagaatattgataggtagctatagtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactcct 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51418011 gaagaatattgttaggtagctatagtagtgaagtataatcatgacacttttattgtgatcgtccttctttttccattctttctatgttattggaactcct 51417912  T
Q  109 tttaattaattaatttttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51417911 tttaattaattaatttttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggt 51417812  T
Q  209 gctaaagagttcaaactggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51417811 gctaaagagttcaaactggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggaga 51417712  T
Q  309 ctttgttatctctgac 324  Q
    ||||||||||||||||    
T  51417711 ctttgttatctctgac 51417696  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 51412949 - 51412871
Alignment:
Q  33 gtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactcctttt 111  Q
    |||||||| ||||||||||||||||| |||||| | ||| |||||||||| | |||||  ||||||||||||| |||||    
T  51412949 gtagtgaactataatcatgacagtttcattgtgcttgtctttctttttccttactttccttgttattggaacttctttt 51412871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 56 - 324
Target Start/End: Complemental strand, 29323615 - 29323355
Alignment:
Q  56 ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt 155  Q
    |||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||      |||||||||    
T  29323615 ttttattgtgactgtccttctttttcctttctttctatgttattggaactccttttaattaatttatttttctttggcatgcttt------gttaatttt 29323522  T
Q  156 cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag 255  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  29323521 cgttagttga--caatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaagtggtataaagaaacttatcagcaattaaaag 29323424  T
Q  256 ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctgac 324  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29323423 ttagtaaaatgattcgattgaaattgacttcacacaccaaaaaggggtggagactttgttatctctgac 29323355  T

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