View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2614_low_1 (Length: 378)
Name: NF2614_low_1
Description: NF2614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2614_low_1 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 8350508 - 8350786
Alignment:
| Q |
7 |
aaacatttacggcctgtggtttatgacacaacatgcttgatatttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaacacttata |
106 |
Q |
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| T |
8350508 |
aaacatttacggcctgtggtttatgacacaacatgattgatatttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaacacttata |
8350607 |
T |
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| Q |
107 |
ttgaacatgctatctctttggaaataaaaagaaagttcatagaattctgcataaacttattttaggtattgattagtatcaaccttttaacatcgtgcat |
206 |
Q |
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| T |
8350608 |
ttgaacatgctatctctttggaaataaaaagaaagttcatagaattctgcataaacttattttaggtattgattagcatcaaccttttaacatcgtgcat |
8350707 |
T |
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| Q |
207 |
ggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatatcataccctccaacatgtacattccatgaa |
285 |
Q |
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| T |
8350708 |
ggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatatcatactctccaacatgtacattccatgaa |
8350786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 8412058 - 8412143
Alignment:
| Q |
273 |
tacattccatgaaaccttgctccttctttcatgccttttgtcaaacagtttttatacatgtttgaaggcatgtccttataagatat |
358 |
Q |
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| T |
8412058 |
tacattccatgaaaccttgatccttctttcacgctttttgtcaaacagtttccatagatggttgaaggcatttccttataagatat |
8412143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 8479948 - 8479879
Alignment:
| Q |
192 |
tttaacatcgtgcatggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
261 |
Q |
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| T |
8479948 |
tttaacattatgcatggcaaaataatggtgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
8479879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 8479814 - 8479759
Alignment:
| Q |
273 |
tacattccatgaaaccttgctccttctttcatgccttttgtcaaacagtttttata |
328 |
Q |
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| T |
8479814 |
tacattccatgaaaccttgctccttctttcgtgcagtttgtcaaacagtttctata |
8479759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 8427433 - 8427353
Alignment:
| Q |
81 |
tagttcaactttttctaacacttatattgaacatgctatctctttggaa---ataaaaagaaagttcatagaattctgcat |
158 |
Q |
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| T |
8427433 |
tagttcaacattttctaacacttactctgaacatgctatctctttagaaaataaaaaaaaaaagttcatagaattctgcat |
8427353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 8436590 - 8436639
Alignment:
| Q |
50 |
ttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaac |
99 |
Q |
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| T |
8436590 |
ttctcttcggatgtgtcggtatggtcagacatagttcaactttttctaac |
8436639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 8451605 - 8451646
Alignment:
| Q |
220 |
tgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
261 |
Q |
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| T |
8451605 |
tgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
8451646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 8350783 - 8350823
Alignment:
| Q |
335 |
tgaaggcatgtccttataagatatccccctgtctctgctcc |
375 |
Q |
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| T |
8350783 |
tgaaggcatgtccttataagatatccccctgtctcttctcc |
8350823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 8480600 - 8480559
Alignment:
| Q |
7 |
aaacatttacggcctgtggtttatgacacaacatgcttgata |
48 |
Q |
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| T |
8480600 |
aaacatttacggcatgtggtttgtgacacaacatgcttgata |
8480559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 8435235 - 8435340
Alignment:
| Q |
10 |
catttacggcctgtggtttatgacacaacatgcttgatatttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaacacttatattg |
109 |
Q |
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| T |
8435235 |
cattttcggcctttggtttgtgacaaaaccgtcttgatctgtctcttcaaatgtgtcggtacggtctcatatagttcaactatttctatctcttattttg |
8435334 |
T |
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| Q |
110 |
aacatg |
115 |
Q |
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| T |
8435335 |
gacatg |
8435340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 9240 - 9322
Alignment:
| Q |
81 |
tagttcaactttttctaacacttatattgaacatgctatctct---ttggaaat--aaaaagaaagttcatagaattctgcat |
158 |
Q |
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| T |
9240 |
tagttcaactttttctaacacttactctgaacatgctatctctttattagaaataaaaaaaaaaagttcatagaattctgcat |
9322 |
T |
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