View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_high_12 (Length: 290)
Name: NF2615_high_12
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 32603963 - 32604223
Alignment:
| Q |
15 |
attatacttggattacacacacatggaaaacatgttacgattacacacacatgggaaaaagcaacata-----ttattaagacttaaaaaagcaacatag |
109 |
Q |
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| T |
32603963 |
attatacttggattacacacacatggaaaacatgttacgattacacacacatgggaaaaagcaacttagttcattattaagacttaaaaaagcaacatag |
32604062 |
T |
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| Q |
110 |
ttcattatttgaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcctaagattatacagtacttgtttttc |
209 |
Q |
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| T |
32604063 |
ttcattatttgaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcccaagatta-----tacttgtttttc |
32604157 |
T |
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| Q |
210 |
tgagttctttcatatc-aagttattccataacaatgatttaaccatttttacaacatggatgtttg |
274 |
Q |
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| T |
32604158 |
tgagttctttcatatcaaagttattccataacaatgatttaaccatttttacaacatggatgtttg |
32604223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 32603870 - 32603901
Alignment:
| Q |
147 |
aaaaagagtcttataaatgtagtacgataatg |
178 |
Q |
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| T |
32603870 |
aaaaagagtcttataaatgtagtacgataatg |
32603901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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