View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2615_high_14 (Length: 282)
Name: NF2615_high_14
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 17328268 - 17328011
Alignment:
| Q |
18 |
taaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctatttctcaacctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17328268 |
taaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctttttctcaacctt |
17328169 |
T |
|
| Q |
118 |
caaccactttcactaccaggcctattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggtggtgctagtt |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328168 |
caaccactttcactaccaggcttattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggtggtgctagtt |
17328069 |
T |
|
| Q |
218 |
tcaacccttcatccacaatttccttctatacattaggactaagaccagattcatctct |
275 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17328068 |
ttaacccttcatccacaatttccttctacacattaggactaagaccagattcatctct |
17328011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University