View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2615_high_20 (Length: 233)
Name: NF2615_high_20
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_high_20 |
 | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0419 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 392 - 201
Alignment:
| Q |
15 |
ttatactctttatatgactcctaaccctttcctagaacccataaagacataaactaaacatacttgtgaactaaatcatattgtaagtttacaaatactc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
392 |
ttatactctttatatgactcctaaccctttcctagaacccataaagacataaactaaacatacttgtgaactaaatcatattgaaagtttacaaatacac |
293 |
T |
|
| Q |
115 |
atacattttaacaccctttctcccctcattcaattattttccaagctcaagaccactttcattacacaccaaattaagtctctcctcttcctcgtgttgt |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
292 |
atatattttaacaccctttctcccctcattcaattattttccaagctcaagaccactttc-----------aattaagtctctcctcttcctcgtgttgt |
204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 28873726 - 28873535
Alignment:
| Q |
15 |
ttatactctttatatgactcctaaccctttcctagaacccataaagacataaactaaacatacttgtgaactaaatcatattgtaagtttacaaatactc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
28873726 |
ttatactctttatatgactcctaaccctttcctagaacccataaagacataaactaaacatacttgtgaactaaatcatattgaaagtttacaaatacac |
28873627 |
T |
|
| Q |
115 |
atacattttaacaccctttctcccctcattcaattattttccaagctcaagaccactttcattacacaccaaattaagtctctcctcttcctcgtgttgt |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28873626 |
atatattttaacaccctttctcccctcattcaattattttccaagctcaagaccactttc-----------aattaagtctctcctcttcctcgtgttgt |
28873538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University