View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2615_high_22 (Length: 222)
Name: NF2615_high_22
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_high_22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 39089476 - 39089261
Alignment:
| Q |
7 |
taacaatcatcaaatatatcaaccattaattaggttccgagnnnnnnnnnnatatatgctgaagaaaaatacatgatcataatattaatttattggatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||| | |
|
|
| T |
39089476 |
taacaatcatcaaatatatcaaccattaattaggttcctagttatttttttatatatgctgacgaaaaatacatgatcatagtattaatttattggataa |
39089377 |
T |
|
| Q |
107 |
taataatgtagtgtacaactagcctgctttaatggcatcagcagcagcttcttctggtgttgatgtataatgttggttagtttaaaataccccaacagag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39089376 |
taataatgtagtgtacaactagcctgctttaatggcatcagcagcagcttcttctggtgttgatgtataatgttggttagtgtaaaataccccaacagag |
39089277 |
T |
|
| Q |
207 |
tcacaatctgatacaa |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39089276 |
tcacaatctgatacaa |
39089261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 44716275 - 44716374
Alignment:
| Q |
123 |
aactagcctgctttaatggcatcagcagcagcttcttctggtgttgatgtataatgttggttagtttaaaataccccaacagagtcacaatctgatacaa |
222 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||| || | |||| || || |||||||||||||| ||||||| |
|
|
| T |
44716275 |
aactagcctgctttgatggcatcggcagcagcttcttccggcgttgatgtataatgttggctattgtaaagcactcccacagagtcacaatcagatacaa |
44716374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University