View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2615_high_3 (Length: 549)
Name: NF2615_high_3
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 2876850 - 2877385
Alignment:
| Q |
1 |
taggatgcagtcgcacaaaaccttgacatcgagactatagttgcagctgtggactgtctttnnnnnnntatgttatagtgttctaagattaacccttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
2876850 |
taggatgcagtcgcacaaaaccttgacatcgagactatagttgcagctgcggactgtctttaaaaaaatatgttatagtgttctgagattaacccttgca |
2876949 |
T |
|
| Q |
101 |
ttagtatgatcatggattttaaataatgcatagttattgtctatatgtgttgcatgcagtagtatatcgactaa----gtgttcaaacttttattttctg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2876950 |
ttagtatgatcatggattttaaataatgcacagttattgtatatatgtgttgcatgtagtagtatatcgactaaaaaagtgttcaaacttttattttctg |
2877049 |
T |
|
| Q |
197 |
tttttggaatttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgtt |
296 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877050 |
ttttcggaatttcgactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgtt |
2877149 |
T |
|
| Q |
297 |
ctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877150 |
ctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaa |
2877249 |
T |
|
| Q |
397 |
tttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtcctt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877250 |
tttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtcctt |
2877349 |
T |
|
| Q |
497 |
actgtattcagcttggcttcgtttaccggcagaagt |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877350 |
actgtattcagcttggcttcgtttaccggcagaagt |
2877385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 213 - 493
Target Start/End: Original strand, 2886833 - 2887113
Alignment:
| Q |
213 |
tggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgg |
312 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
2886833 |
tggcaggaaatgaaggttcaaggggtactagaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgg |
2886932 |
T |
|
| Q |
313 |
gtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaa |
412 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2886933 |
gagttagtggagctggtaaaactactttaatggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaa |
2887032 |
T |
|
| Q |
413 |
aaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtc |
493 |
Q |
| |
|
||| |||||||| |||||| |||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
2887033 |
aaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtc |
2887113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 216 - 532
Target Start/End: Complemental strand, 2897540 - 2897224
Alignment:
| Q |
216 |
caggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtg |
315 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| | |
|
|
| T |
2897540 |
caggaaatgaaggttcaaggtgtagtagaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggag |
2897441 |
T |
|
| Q |
316 |
ttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||| ||||| | |||||||||||| || |||| ||||| |
|
|
| T |
2897440 |
ttagtggagctggtaaaactactttaatggatgttttggctggtagaaaaaccggtggttatatcgatggcaccataaaaatttcaggctaccttaaaag |
2897341 |
T |
|
| Q |
416 |
gcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggctt |
515 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| | | || || || |||||| |
|
|
| T |
2897340 |
acaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcaatggtctactcggcctggctt |
2897241 |
T |
|
| Q |
516 |
cgtttaccggcagaagt |
532 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
2897240 |
cgtttaccagcagaagt |
2897224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 205 - 523
Target Start/End: Complemental strand, 44223473 - 44223155
Alignment:
| Q |
205 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
304 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||| || || |||||||||||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
44223473 |
atttcaactggcaggaaatgaaggagcaaggtgttagagaagacagattagtgcttttgaagggtgttagtggtgcattcaggcccggtgttctcacagc |
44223374 |
T |
|
| Q |
305 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
404 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44223373 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44223274 |
T |
|
| Q |
405 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtatt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || || || ||||| || |||||||| || || |||| |
|
|
| T |
44223273 |
taccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgctttatt |
44223174 |
T |
|
| Q |
505 |
cagcttggcttcgtttacc |
523 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
44223173 |
cggcgtggcttcgtttacc |
44223155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 205 - 523
Target Start/End: Complemental strand, 44211311 - 44210993
Alignment:
| Q |
205 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
304 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||||| || ||||||||||||||||| ||||| |||||||| || || |||||||||||||| |
|
|
| T |
44211311 |
atttcaactggcaggaaatgaaggagcaaggtgttacagaggacagactagtgcttttgaagggtgttagcggtgcattcaggcccggtgttctcacagc |
44211212 |
T |
|
| Q |
305 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
404 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44211211 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44211112 |
T |
|
| Q |
405 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtatt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || || ||||| ||||| || ||||| ||| | || || | |
|
|
| T |
44211111 |
taccctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatgaatcccttctttact |
44211012 |
T |
|
| Q |
505 |
cagcttggcttcgtttacc |
523 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44211011 |
cagcatggcttcgtttacc |
44210993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 205 - 523
Target Start/End: Complemental strand, 44234295 - 44233977
Alignment:
| Q |
205 |
atttcaactggcaggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagc |
304 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||||| || |||||||||||||||| |||||||| ||||| || |||||||| || || || |
|
|
| T |
44234295 |
atttcaactggcaggaaatgaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcctggtgtacttacggc |
44234196 |
T |
|
| Q |
305 |
tttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggt |
404 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| |
|
|
| T |
44234195 |
tttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctggg |
44234096 |
T |
|
| Q |
405 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtatt |
504 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||| ||||| || |||||||| || || || | |
|
|
| T |
44234095 |
tatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttact |
44233996 |
T |
|
| Q |
505 |
cagcttggcttcgtttacc |
523 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44233995 |
cagcgtggcttcgtttacc |
44233977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 485
Target Start/End: Complemental strand, 43457796 - 43457586
Alignment:
| Q |
275 |
tggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggt |
374 |
Q |
| |
|
||||||||| || ||||| ||||| || ||||| ||||| |||||||||||||| || || |||||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
43457796 |
tggtgcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggt |
43457697 |
T |
|
| Q |
375 |
tatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctc |
474 |
Q |
| |
|
|| ||||| || | | ||| ||||| | |||||| || |||||||||||||| ||||| ||||| || || || || | |||||||| || || | |
|
|
| T |
43457696 |
tacattgaaggagatgttagaatctctggcttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccac |
43457597 |
T |
|
| Q |
475 |
aagttactgtc |
485 |
Q |
| |
|
||||||||||| |
|
|
| T |
43457596 |
aagttactgtc |
43457586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 282 - 517
Target Start/End: Complemental strand, 39589547 - 39589312
Alignment:
| Q |
282 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattg |
381 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || | || ||||| |||||||||||| ||||||| | ||||||| |||||| |||| ||||||| |
|
|
| T |
39589547 |
tttaggcctggtgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattg |
39589448 |
T |
|
| Q |
382 |
atgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttac |
481 |
Q |
| |
|
||||| ||| | ||||||||| || ||||| ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
39589447 |
gtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttac |
39589348 |
T |
|
| Q |
482 |
tgtctatgagtccttactgtattcagcttggcttcg |
517 |
Q |
| |
|
||| ||||| || || || |||||||| |||||||| |
|
|
| T |
39589347 |
tgtatatgaatctttgctctattcagcatggcttcg |
39589312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 216 - 514
Target Start/End: Original strand, 39365889 - 39366187
Alignment:
| Q |
216 |
caggaaatgaaagatcaaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtg |
315 |
Q |
| |
|
|||||||||| | | | |||||| || ||||||| | |||| ||| ||||||| ||||||| || || ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
39365889 |
caggaaatgagaaaccgaggtgttattgaggataagttagttcttctgaagggtcttagtggagctttcagaccaggtgttctcacggctctgatgggtg |
39365988 |
T |
|
| Q |
316 |
ttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaa |
415 |
Q |
| |
|
| | || ||||| ||||| ||| |||||||||| | ||||||| |||||| |||| ||||||| ||||| ||| | ||| ||||| || || || || |
|
|
| T |
39365989 |
tgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaa |
39366088 |
T |
|
| Q |
416 |
gcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || || ||||| | ||||||||| || ||||| |||||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
39366089 |
gcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgtctatgaatctttactctattcagcatggct |
39366187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 258 - 514
Target Start/End: Complemental strand, 39547743 - 39547487
Alignment:
| Q |
258 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
357 |
Q |
| |
|
||||||||||| || ||||| || || ||||||||||||||||| ||| |||||||||| | ||| || || ||||| ||| ||||||||||| | ||| |
|
|
| T |
39547743 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg |
39547644 |
T |
|
| Q |
358 |
gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa |
457 |
Q |
| |
|
|||| |||||| |||| ||||||| ||||| ||| | ||| ||||| || || || |||||||| || ||||| ||||| || || || |||||||| | |
|
|
| T |
39547643 |
gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaac |
39547544 |
T |
|
| Q |
458 |
tgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || || || |||||||| ||||| |
|
|
| T |
39547543 |
tgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
39547487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 258 - 514
Target Start/End: Complemental strand, 39564522 - 39564266
Alignment:
| Q |
258 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
357 |
Q |
| |
|
||||||||||| || ||||| || || ||||||||||||||||| ||| | |||||||| | || ||||| ||||| ||| |||||||||| | ||| |
|
|
| T |
39564522 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg |
39564423 |
T |
|
| Q |
358 |
gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa |
457 |
Q |
| |
|
|||||||||| | || ||||||| ||||| ||| | |||||| || | || || ||||||||||| ||||| ||||| ||||| || |||||||| || |
|
|
| T |
39564422 |
gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa |
39564323 |
T |
|
| Q |
458 |
tgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| || || || |||||||| ||||| |
|
|
| T |
39564322 |
tgatatccactctccttatgttactgtctatgaatctttgctctattcagcatggct |
39564266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 243 - 514
Target Start/End: Original strand, 39338563 - 39338834
Alignment:
| Q |
243 |
gaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttga |
342 |
Q |
| |
|
||||||| | |||| ||||||||||| || ||||| || || ||||| ||||||||||| ||| ||||||| | | || ||||| ||||| ||| ||| |
|
|
| T |
39338563 |
gaggataagttagttcttttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctga |
39338662 |
T |
|
| Q |
343 |
tggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctgg |
442 |
Q |
| |
|
||||||| | ||||||| |||||| |||| ||||||| ||||| ||| |||||||| || | || || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
39338663 |
tggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgg |
39338762 |
T |
|
| Q |
443 |
ctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
|| |||||||| | ||||||||| || ||||| |||||||||||||| || || || |||||||| ||||| |
|
|
| T |
39338763 |
atactgtgagcaaactgatatccattctcctcatgttactgtctatgaatctttgctctattcagcatggct |
39338834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 514
Target Start/End: Complemental strand, 39575309 - 39575077
Alignment:
| Q |
282 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattg |
381 |
Q |
| |
|
||||| || ||||||||||| || | |||||||| | ||| ||||| ||||| ||||||||||||||| | ||||||||||||| | | || |||||| |
|
|
| T |
39575309 |
tttaggccaggtgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatatta |
39575210 |
T |
|
| Q |
382 |
atgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttac |
481 |
Q |
| |
|
||||| ||| | | |||| || | || |||||||||||||| ||||| ||||| || || || |||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
39575209 |
gtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcctcatattac |
39575110 |
T |
|
| Q |
482 |
tgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
||||||||||| || || |||||||| ||||| |
|
|
| T |
39575109 |
ggtctatgagtctttgctctattcagcatggct |
39575077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 253 - 490
Target Start/End: Original strand, 39353416 - 39353653
Alignment:
| Q |
253 |
tagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtatt |
352 |
Q |
| |
|
|||| ||||| ||||| || ||||| || || ||||| ||||||||||| ||| ||||||| | | ||| ||||| ||||| ||| | |||||||| | |
|
|
| T |
39353416 |
tagttcttttaaagggtgtaagtggagctttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgct |
39353515 |
T |
|
| Q |
353 |
ggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgag |
452 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||| ||| | |||||| || || || |||||||||||||| ||||| ||||| ||||| || |||||| |
|
|
| T |
39353516 |
ttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgag |
39353615 |
T |
|
| Q |
453 |
cagaatgatatccactcccctcaagttactgtctatga |
490 |
Q |
| |
|
|| | ||||||||| || ||| | |||||||||||||| |
|
|
| T |
39353616 |
caaactgatatccattctccttatgttactgtctatga |
39353653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 514
Target Start/End: Complemental strand, 39538258 - 39538029
Alignment:
| Q |
285 |
agacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatg |
384 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || | || || || ||||| ||| |||||||||| | ||||||| |||||| |||| ||||||| || |
|
|
| T |
39538258 |
agaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtg |
39538159 |
T |
|
| Q |
385 |
ggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgt |
484 |
Q |
| |
|
||| ||| | ||||||||| || || || |||||||| || ||||| ||||| || || || |||||||| | ||||||||| || ||| | |||||||| |
|
|
| T |
39538158 |
ggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctccttatgttactgt |
39538059 |
T |
|
| Q |
485 |
ctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
|||||| || || || |||||||| ||||| |
|
|
| T |
39538058 |
ctatgaatctttgctctattcagcatggct |
39538029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 490
Target Start/End: Complemental strand, 39622324 - 39622107
Alignment:
| Q |
273 |
agtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtg |
372 |
Q |
| |
|
|||||| |||| ||||| | ||||||||||||| |||||||||| | ||| ||||| ||||| ||| ||||||||||| | ||||| || ||||| || | |
|
|
| T |
39622324 |
agtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagag |
39622225 |
T |
|
| Q |
373 |
gttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccc |
472 |
Q |
| |
|
| ||||||| ||||| ||| | ||||||||| || | || ||||| ||||| ||||| ||| | | ||| || ||||| || ||| ||||||| || || |
|
|
| T |
39622224 |
gatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc |
39622125 |
T |
|
| Q |
473 |
tcaagttactgtctatga |
490 |
Q |
| |
|
| | |||||||| ||||| |
|
|
| T |
39622124 |
ttatgttactgtatatga |
39622107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 514
Target Start/End: Complemental strand, 1085013 - 1084823
Alignment:
| Q |
325 |
ctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccc-ta-aaaagcaagaa |
422 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||||| |||||| ||| ||||||| ||||| ||| | ||||||||| || || || ||||||||||| |
|
|
| T |
1085013 |
ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa |
1084915 |
T |
|
| Q |
423 |
acatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggct |
514 |
Q |
| |
|
|||||| | ||||| ||||| || |||||||| | |||||||| || ||||| |||||||||| ||||| || || |||||||| ||||| |
|
|
| T |
1084914 |
acatttacaagaatttctggatactgtgagcaaatagatatccattctcctcattttactgtctacgagtctttgctctattcagcatggct |
1084823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 481
Target Start/End: Original strand, 21901613 - 21901701
Alignment:
| Q |
393 |
aaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttac |
481 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||||||||| ||||| || || ||| ||| || |||||||| || || ||||||||||| |
|
|
| T |
21901613 |
aaaatatctggttacccaaaagagcaacaaacatttgccagaatatcgggatatgatgaacaaaatgatatacattctcctcaagttac |
21901701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 517
Target Start/End: Complemental strand, 42133228 - 42133020
Alignment:
| Q |
309 |
atgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttacc |
408 |
Q |
| |
|
|||||||| ||||| ||||| || || || | ||||||||||| || || || ||||| |||| |||||||| || || || || || |||||||||| |
|
|
| T |
42133228 |
atgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacc |
42133129 |
T |
|
| Q |
409 |
ctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagc |
508 |
Q |
| |
|
| || || ||| |||||||||| || || ||| ||||||||||| |||||||| || || || | || ||||||||||| || ||||| | ||| || |
|
|
| T |
42133128 |
caaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctccctatgtaactgtctatgaatctttactattttctgc |
42133029 |
T |
|
| Q |
509 |
ttggcttcg |
517 |
Q |
| |
|
|||||||| |
|
|
| T |
42133028 |
atggcttcg |
42133020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 382
Target Start/End: Complemental strand, 2149130 - 2149006
Alignment:
| Q |
258 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
357 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| ||||| ||||| || |||||||| |||||||| || |||| |
|
|
| T |
2149130 |
cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctg |
2149031 |
T |
|
| Q |
358 |
gtaggaaaactagtggttatattga |
382 |
Q |
| |
|
| | ||||||||||| || ||||| |
|
|
| T |
2149030 |
gaataaaaactagtggatacattga |
2149006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 523
Target Start/End: Complemental strand, 2161113 - 2160848
Alignment:
| Q |
258 |
cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg |
357 |
Q |
| |
|
||||||||||| | | ||| || ||||| ||||| || || || |||||||||||||| ||||| || || || |||||| | |||||||| || |||| |
|
|
| T |
2161113 |
cttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatggatgttttagctg |
2161014 |
T |
|
| Q |
358 |
gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa |
457 |
Q |
| |
|
| ||||||||| |||| ||||||||||| | ||| | ||| || || || || || || ||| ||||||||||| | || || || ||||| ||||| |
|
|
| T |
2161013 |
gaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaatt |
2160914 |
T |
|
| Q |
458 |
tgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggcttcgtttacc |
523 |
Q |
| |
|
||||||||| || ||| | ||||| || ||||| || || | ||||| || |||||||||||||| |
|
|
| T |
2160913 |
tgatatccattcacctaatgttacagtttatgaatctttgttatattcggcatggcttcgtttacc |
2160848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 49773213 - 49773298
Alignment:
| Q |
405 |
taccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatga |
490 |
Q |
| |
|
|||||||| ||||||||||||||| || | || || || || |||||||| | |||||||||||| || || |||||||||||||| |
|
|
| T |
49773213 |
taccctaagaagcaagaaacattttctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga |
49773298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 49773090 - 49773175
Alignment:
| Q |
282 |
tttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaac |
367 |
Q |
| |
|
|||||||| || ||||| |||||| | |||||| | ||||||||||||||||| ||| | |||||||| || |||| |||||||| |
|
|
| T |
49773090 |
tttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaac |
49773175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 481
Target Start/End: Original strand, 29776978 - 29777142
Alignment:
| Q |
317 |
tagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaag |
416 |
Q |
| |
|
|||||| ||||| || || ||| | ||||||||| | ||||| || |||||| | || ||||| || ||| ||| ||||| ||||||||||| ||| || |
|
|
| T |
29776978 |
tagtggggctggaaagaccactctaatggatgtacttgctggcagaaaaactggagggtatatagaaggggacatcaaaatatctggttacccaaaagag |
29777077 |
T |
|
| Q |
417 |
caagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttac |
481 |
Q |
| |
|
||| |||| ||||| ||||| || || ||| ||| || |||||||| || || ||||||||||| |
|
|
| T |
29777078 |
caacaaacgtttgccagaatatcgggatatgttgaacaaaatgatatacattcgcctcaagttac |
29777142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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