View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_1 (Length: 598)
Name: NF2615_low_1
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Original strand, 1946315 - 1946885
Alignment:
| Q |
18 |
agttcgtccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattg |
117 |
Q |
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| T |
1946315 |
agttcgtccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattg |
1946414 |
T |
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| Q |
118 |
aagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgcc |
217 |
Q |
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| T |
1946415 |
aagcaggaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgcc |
1946514 |
T |
|
| Q |
218 |
actcatcactaccaccttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgc |
317 |
Q |
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| T |
1946515 |
actcatcactaccaccttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgc |
1946614 |
T |
|
| Q |
318 |
ttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgc |
417 |
Q |
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| T |
1946615 |
ttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgc |
1946714 |
T |
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| Q |
418 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
517 |
Q |
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| T |
1946715 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
1946814 |
T |
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| Q |
518 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
588 |
Q |
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| T |
1946815 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
1946885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 588
Target Start/End: Original strand, 1928203 - 1928773
Alignment:
| Q |
24 |
tccattccaacatgttgtactccttgacgcaccctcattttcgcctgcgcgtctggaggtagactagcccattctggcttccatgtgcaaattgaagcag |
123 |
Q |
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|||| ||||| ||||||||||||||||||| | || ||||||||||| | ||| ||| || ||| ||||||||| ||||||||||||||||| ||| |
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| T |
1928203 |
tccagtccaatatgttgtactccttgacgcgacttctttttcgcctgctcctctcgagacaggctactccattctggtttccatgtgcaaattgatccag |
1928302 |
T |
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| Q |
124 |
gaccataagtttcagtcataccatatgcatgagttacatgaaatcctagttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcat |
223 |
Q |
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||||||||||||| |||| |||||||| |||| || || |||||||||||||||| ||| |||| | || ||||| ||||||||||| || |||| |
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| T |
1928303 |
gaccataagtttctgtcaaaccatatgaatgaactaaatcaaatcctagttcttccatcctaaaaaatacgtccggtggcggtggagcaccacctgtcat |
1928402 |
T |
|
| Q |
224 |
cactaccaccttcccagaaagcagcttcctaat------tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgc |
317 |
Q |
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|||||||||||||| | ||| |||| || || ||||| ||||||||| |||||||| || |||||| || ||| |||| ||||| |||||| |
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| T |
1928403 |
cactaccaccttcctcggaagtggctttctgatatcaggtggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgc |
1928502 |
T |
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| Q |
318 |
ttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgc |
417 |
Q |
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||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
1928503 |
ttaaaaatattgtcaaatatccctttagcagttacatttctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgc |
1928602 |
T |
|
| Q |
418 |
aatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaa |
517 |
Q |
| |
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||||| |||| |||||||||||||||||||| | | || ||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1928603 |
aatgaaacatgggaacacaccataaatacaccggcatagacttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctata |
1928702 |
T |
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| Q |
518 |
gattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
588 |
Q |
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| |||||| |||||| ||||||| ||||||||||||||| | | ||||||| ||| |||||||| |||| |
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| T |
1928703 |
tactacacctttaggacttgatgttgttccagaagtgtaattcaaagaaattggatcccattcatcttttg |
1928773 |
T |
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