View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_11 (Length: 315)
Name: NF2615_low_11
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 38156768 - 38157038
Alignment:
| Q |
30 |
aactacagcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcattatgaatagaaatttt |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38156768 |
aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcattatgaatagaaatttt |
38156867 |
T |
|
| Q |
130 |
aacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcgcgtaaa |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38156868 |
aacatacatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtcacgtaag |
38156967 |
T |
|
| Q |
230 |
tgtactttgtaatacgctgattagtacatagtattgtttgatagcaactatagttgcactatagtactata |
300 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38156968 |
tgtattttgtaatacgctgattagtacatagtgttgtttgatagcaactatagttgcactatagtactata |
38157038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 38221097 - 38221329
Alignment:
| Q |
30 |
aactacagcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcattatgaatagaaatttt |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221097 |
aactacggcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcattatgaatagaaatttt |
38221196 |
T |
|
| Q |
130 |
a----acataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcat-gatattgtcgc |
224 |
Q |
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| |||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||||| ||||||||||| |||||||| | |
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| T |
38221197 |
aagatacatgcatgtaatgtaaatgagcttaatgaagatacattgtcagtgtaaaatagttttacaccaacatccattgaaaactcatatatattgtcac |
38221296 |
T |
|
| Q |
225 |
gtaaatgtactttgtaatacgctgattagtaca |
257 |
Q |
| |
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|||||||||||| |||||||| ||||||||||| |
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| T |
38221297 |
gtaaatgtacttagtaatacgttgattagtaca |
38221329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 38178466 - 38178221
Alignment:
| Q |
16 |
acatgttggtagaaaactacagcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcatta |
115 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
38178466 |
acatgttggtagaaaactacggcgatatt---gtgcattgttagtcaaattagtataactctttc----ctcttgttagaatgattaaaatgtggcatta |
38178374 |
T |
|
| Q |
116 |
tgaatagaaattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatga |
215 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
38178373 |
tgaataataattttaagatacatgtaatgtaaatgagtttattgaagatccgttatcggtgtaaaatagttttactcgaacatccattgaaaactcatga |
38178274 |
T |
|
| Q |
216 |
tattgtcgcgtaaatgtactttgtaatacgctgattagtacatagtattgttt |
268 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
38178273 |
tattgtcacgcaaatgtactttgtaatacgctgattagcacatagtgttgttt |
38178221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 38205690 - 38205445
Alignment:
| Q |
16 |
acatgttggtagaaaactacagcgatattattgtgcattgttagtcaaattagtataactctttctttcctcttgttagaatgattaaaatgttgcatta |
115 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
38205690 |
acatgttggtagaaaactacggcgatatt---gtgcattgttagtcaaattagtataactctttc----ctcttgttagaatgattaaaatgtggcatta |
38205598 |
T |
|
| Q |
116 |
tgaatagaaattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatga |
215 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
38205597 |
tgaataataattttaagatacatgtaatgtaaatgagtttattgaagatccgttatcggtgtaaaatagttttactcgaacatccattgaaaactcatga |
38205498 |
T |
|
| Q |
216 |
tattgtcgcgtaaatgtactttgtaatacgctgattagtacatagtattgttt |
268 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
38205497 |
tattgtcacgcaaatgtactttgtaatacgctgattagcacatagtgttgttt |
38205445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 38167862 - 38168022
Alignment:
| Q |
82 |
ttcctcttgttagaatgattaaaatgttgcattatgaatagaaattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaa |
181 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
38167862 |
ttcctcttgttagaatgattaaaatgtggcattatgaaaagaaattctaagatgcatgtaatgtaaatgagtttaatgaaaatgcattgtcggtctaaaa |
38167961 |
T |
|
| Q |
182 |
tagtttgacatcaacatccactgaaaactcatgatattgtcgcgtaaatgtactttgtaat |
242 |
Q |
| |
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|||||| ||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
38167962 |
tagttttacaccaacatccattgaaaactcatgatattgtcacgtaagcctactttgtaat |
38168022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 38199242 - 38199082
Alignment:
| Q |
82 |
ttcctcttgttagaatgattaaaatgttgcattatgaatagaaattttaacataaatgtaatgtaaatgagtttaatgaagatgcattgtcggtgtaaaa |
181 |
Q |
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|
||||||||||||||||||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
38199242 |
ttcctcttgttagaatgattaaaatgtggcattatgaaaagaaattctaagatgcatgtaatgtaaatgagtttaatgaaaatgcattgtcggtctaaaa |
38199143 |
T |
|
| Q |
182 |
tagtttgacatcaacatccactgaaaactcatgatattgtcgcgtaaatgtactttgtaat |
242 |
Q |
| |
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|||||| ||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
38199142 |
tagttttacaccaacatccattgaaaactcatgatattgtcacgtaagcctactttgtaat |
38199082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 2995611 - 2995678
Alignment:
| Q |
155 |
taatgaagatgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattgtc |
222 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||| ||||||||||| | | |||||||||||| ||||| |
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| T |
2995611 |
taatggagatgcattatcggtgtaaactagttttacatcaacatctaataaaaactcatgatgttgtc |
2995678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 43246161 - 43246213
Alignment:
| Q |
149 |
tgagtttaatgaagatgcattgtcggtgtaaaatagtttgacatcaacatcca |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| ||| || |||||| |
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|
| T |
43246161 |
tgagtttaatgaagatgcattgacggtgtaaactagttttacaacatcatcca |
43246213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 44804565 - 44804598
Alignment:
| Q |
154 |
ttaatgaagatgcattgtcggtgtaaaatagttt |
187 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
44804565 |
ttaatgaagatgcattgacggtgtaaaatagttt |
44804598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 2240042 - 2239986
Alignment:
| Q |
164 |
tgcattgtcggtgtaaaatagtttgacatcaacatccactgaaaactcatgatattg |
220 |
Q |
| |
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||||||||||||||||| |||||| ||||| ||||| | ||| |||||| ||||||| |
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|
| T |
2240042 |
tgcattgtcggtgtaaactagttttacatcgacatctaatgagaactcaagatattg |
2239986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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