View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_12 (Length: 292)
Name: NF2615_low_12
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 6490509 - 6490252
Alignment:
| Q |
19 |
accacagagccaaaacagtttggttcactaaaacaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgattcag |
118 |
Q |
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| T |
6490509 |
accacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgattcag |
6490410 |
T |
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| Q |
119 |
catgaatgacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaattagtaaagaagacatactgaaggcttattgaaagttaaacggag |
218 |
Q |
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| T |
6490409 |
catgaatgacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaattagtatagaagacatactgaaggcttattgaaagttaaacggag |
6490310 |
T |
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| Q |
219 |
agtggctcgattctgtaagcaatgtcatgatgtttaagataacaaaattcaggcttct |
276 |
Q |
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| T |
6490309 |
agtggctcgattctgtaagcaatgtcatgatgtttaagataacaaaattcaggcttct |
6490252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 38700179 - 38700432
Alignment:
| Q |
26 |
agccaaaacagtttggttcactaaaacaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctctaatgattcagcatgaat |
125 |
Q |
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||||| ||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38700179 |
agccacaacagtttggttctctaaataaccttcaccacagatccttacttaaatcatagaaaacccatctaccttttgtttctaatgattcagcatgaat |
38700278 |
T |
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| Q |
126 |
gacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaattagtaaagaagacatactgaaggcttattgaaagttaaacggagagtggct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
38700279 |
aacattgtgatcatatataaagaaaatgtgccaaatggtatatagtaactagtgaagaagacatactgaagacttattgaaagttaaatggagagtggct |
38700378 |
T |
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| Q |
226 |
cgattctgtaagcaatg---tcatgatgtttaagataacaaaattcaggcttct |
276 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
38700379 |
cgattctgtaagcaataatattatgatgtttaagataacaaaattcaggcttct |
38700432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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