View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2615_low_16 (Length: 263)

Name: NF2615_low_16
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2615_low_16
NF2615_low_16
[»] chr1 (6 HSPs)
chr1 (7-196)||(49899749-49899938)
chr1 (196-248)||(35284167-35284219)
chr1 (197-248)||(44410712-44410763)
chr1 (195-233)||(3252224-3252262)
chr1 (197-254)||(31986131-31986188)
chr1 (195-231)||(42866276-42866312)
[»] scaffold0636 (1 HSPs)
scaffold0636 (192-248)||(1536-1592)
[»] chr7 (9 HSPs)
chr7 (194-254)||(43779792-43779852)
chr7 (193-231)||(31958703-31958741)
chr7 (197-232)||(25069298-25069333)
chr7 (197-235)||(20623149-20623187)
chr7 (193-231)||(44606001-44606039)
chr7 (195-231)||(14802029-14802065)
chr7 (195-231)||(15249021-15249057)
chr7 (195-231)||(36858131-36858167)
chr7 (195-231)||(46170639-46170675)
[»] chr2 (8 HSPs)
chr2 (197-235)||(40404311-40404349)
chr2 (197-248)||(16106767-16106818)
chr2 (194-233)||(21800750-21800789)
chr2 (194-233)||(37256052-37256091)
chr2 (197-247)||(5560767-5560817)
chr2 (197-251)||(7501379-7501433)
chr2 (197-235)||(37032875-37032913)
chr2 (196-248)||(35305348-35305400)
[»] chr6 (4 HSPs)
chr6 (195-247)||(6817288-6817340)
chr6 (196-251)||(21528890-21528945)
chr6 (194-231)||(22351313-22351350)
chr6 (194-230)||(4455916-4455952)
[»] chr5 (8 HSPs)
chr5 (197-248)||(23015033-23015084)
chr5 (197-239)||(43581743-43581785)
chr5 (193-233)||(18942245-18942285)
chr5 (197-231)||(8761163-8761197)
chr5 (197-235)||(33225007-33225045)
chr5 (195-235)||(814838-814878)
chr5 (197-233)||(14352005-14352041)
chr5 (195-231)||(40143902-40143938)
[»] chr4 (7 HSPs)
chr4 (197-235)||(41866656-41866694)
chr4 (195-248)||(32988291-32988344)
chr4 (197-247)||(56077470-56077520)
chr4 (197-254)||(25510487-25510544)
chr4 (197-233)||(8132791-8132827)
chr4 (197-233)||(18707548-18707584)
chr4 (196-248)||(54822046-54822098)
[»] chr3 (10 HSPs)
chr3 (195-251)||(51229559-51229615)
chr3 (197-236)||(6516825-6516864)
chr3 (197-232)||(21635401-21635436)
chr3 (197-248)||(45104163-45104214)
chr3 (198-248)||(11412544-11412594)
chr3 (197-247)||(42217214-42217264)
chr3 (197-230)||(48884332-48884365)
chr3 (197-233)||(44201109-44201145)
chr3 (196-248)||(51537241-51537293)
chr3 (194-230)||(53605776-53605812)
[»] scaffold0131 (1 HSPs)
scaffold0131 (197-232)||(7941-7976)
[»] chr8 (3 HSPs)
chr8 (192-231)||(31008604-31008643)
chr8 (192-247)||(38968714-38968769)
chr8 (195-231)||(41726427-41726463)
[»] scaffold0712 (1 HSPs)
scaffold0712 (197-233)||(4994-5030)
[»] scaffold0709 (1 HSPs)
scaffold0709 (197-233)||(5014-5050)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 49899938 - 49899749
Alignment:
Q  7 cgttaattgtttttgcgcatgatcctataactcatcctaagaacattatttaattatgtaaacagtgaaaactgaaagagcatgggtctggaacatttgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49899938 cgttaattgtttttgcgcatgatcctataactcatcctaagaacattatttaattatgtaaatagtgaaaactgaaagagcatgggtctggaacatttgt 49899839  T
Q  107 acatttctgggtcaaggttcaaagaataccgcgtgagtgagtgagtgagtcactatttaggtttatataattccaactaactatgacaac 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49899838 acatttctgggtcaaggttcaaagaataccgcgtgagtgagtgagtgagtcactatttaggtttatataatcccaactaactatgacaac 49899749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 35284167 - 35284219
Alignment:
Q  196 ccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  35284167 ccatagttttaaaaatcggatcggtcatcgactcggtaaggttagtggatcac 35284219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 44410712 - 44410763
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||    
T  44410712 catagttttaaaactcggttcggtcatcgactcggcaagggtactgggtcac 44410763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 3252224 - 3252262
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  3252224 accatagttttaaaactcggctcggtcatcgactcggta 3252262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 31986188 - 31986131
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacaggttc 254  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||  |||||||| |||||    
T  31986188 catagttttaaaactcggaccggtcgtcgactcggtaagggtgctgggtcactggttc 31986131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 42866276 - 42866312
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  42866276 accatagttttaaaactcggctcggtcatcgactcgg 42866312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 1536 - 1592
Alignment:
Q  192 acaaccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    |||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||    
T  1536 acaaccatagttttaaaactcggaccggtcatcgactcggtgagtgtagtgggtcac 1592  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 43779852 - 43779792
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacaggttc 254  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||| |||||||| |||||    
T  43779852 aaccatagttttaaaactcggatcggtgatcgactcggtaagggtattgggtcactggttc 43779792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 31958741 - 31958703
Alignment:
Q  193 caaccatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  31958741 caaccatagttttaaaaatcggatcggtgatcgactcgg 31958703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 25069298 - 25069333
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggt 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25069298 catagttttaaaaatcggaccggtcatcgactcggt 25069333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 20623149 - 20623187
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  20623149 catagttttaaaaaccggaccggtcatcgactcggtaag 20623187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 44606039 - 44606001
Alignment:
Q  193 caaccatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  44606039 caaccatagttttaaaattcggctcggtcatcgactcgg 44606001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 14802065 - 14802029
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  14802065 accatagttttaaaactcggctcggtcatcgactcgg 14802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 15249057 - 15249021
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  15249057 accatagttttaaaactcggctcggtcatcgactcgg 15249021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 36858131 - 36858167
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  36858131 accatagttttaaaactcggctcggtcatcgactcgg 36858167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 46170639 - 46170675
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  46170639 accatagttttaaaattcggctcggtcatcgactcgg 46170675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 40404311 - 40404349
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40404311 catagttttaaaaatcggatcggtcatcgactcggtaag 40404349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 16106818 - 16106767
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  16106818 catagttttaaaactcggctcggtcatcgactcggcaagagtattgggtcac 16106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 21800789 - 21800750
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcggta 233  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  21800789 aaccatagttttaaaactcggctcggtcatcgactcggta 21800750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 37256091 - 37256052
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  37256091 aaccatagttttaaaaaccggttcggtcatcgactcggta 37256052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 5560817 - 5560767
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtca 247  Q
    ||||||||||||| ||||| ||| |||||||||||| || |||||||||||    
T  5560817 catagttttaaaactcggaccggccatcgactcggtgagggtagtgggtca 5560767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 7501379 - 7501433
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacagg 251  Q
    ||||||||||||| ||||| |||| ||||||||||| || ||| |||||||||||    
T  7501379 catagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagg 7501433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 37032913 - 37032875
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  37032913 catagttttaaaaaccggaccggtcatcgactcggtaag 37032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 35305400 - 35305348
Alignment:
Q  196 ccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    |||||||||||||| |||| |||||||||||||||| | | ||| ||||||||    
T  35305400 ccatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcac 35305348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 6817288 - 6817340
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtca 247  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||| |||||||    
T  6817288 accatagttttaaaactcggctcggtcatcgactcggtaagggtactgggtca 6817340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 21528945 - 21528890
Alignment:
Q  196 ccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacagg 251  Q
    |||||||||||||| ||||| |||| ||||||||||| || ||| |||||||||||    
T  21528945 ccatagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagg 21528890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 22351350 - 22351313
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  22351350 aaccatagttttaaaactcggctcggtcatcgactcgg 22351313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 4455952 - 4455916
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcg 230  Q
    ||||||||||||||||||| || ||||||||||||||    
T  4455952 aaccatagttttaaaaatcagaccggtcatcgactcg 4455916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 23015033 - 23015084
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||||||||||||| |||||||||||| | |||| ||||||||    
T  23015033 catagttttaaaaatcggatcggacatcgactcggtcaaagtactgggtcac 23015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 43581785 - 43581743
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagta 239  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  43581785 catagttttaaaaaccggaccggtcatcgactcggtaagagta 43581743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 18942245 - 18942285
Alignment:
Q  193 caaccatagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  18942245 caaccatagttttaaaactcggctcggtcatcgactcggta 18942285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 8761197 - 8761163
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||| |||||||||||||||||||||    
T  8761197 catagttttaaaactcggatcggtcatcgactcgg 8761163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 33225045 - 33225007
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  33225045 catagttttaaaaaccggaccggtcatcgactcggtaag 33225007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 814878 - 814838
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  814878 accatagttttaaaactcagatcggtgatcgactcggtaag 814838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 14352041 - 14352005
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  14352041 catagttttaaaactcggctcggtcatcgactcggta 14352005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 40143902 - 40143938
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  40143902 accatagttttaaaactcggctcggtcatcgactcgg 40143938  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 41866656 - 41866694
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaag 235  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  41866656 catagttttaaaaatcggaccggtcatcgactcggtaag 41866694  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 32988344 - 32988291
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||||| ||||| ||| |||||||||||| || ||||||||||||    
T  32988344 accatagttttaaaactcggaccggccatcgactcggtgagggtagtgggtcac 32988291  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 56077520 - 56077470
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtca 247  Q
    |||||||||||||| |||| |||| |||||||||||||| ||| |||||||    
T  56077520 catagttttaaaaaccggaccggtgatcgactcggtaagggtactgggtca 56077470  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 25510487 - 25510544
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacaggttc 254  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||  |||||||| |||||    
T  25510487 catagttttaaaactcggaccggtcgtcgactcggtaagggtgctgggtcactggttc 25510544  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 8132791 - 8132827
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  8132791 catagttttaaaactcggctcggtcatcgactcggta 8132827  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 18707584 - 18707548
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  18707584 catagttttaaaaatcggaccggtgatcgactcggta 18707548  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 54822046 - 54822098
Alignment:
Q  196 ccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    |||||||||||||| |||| |||||||||||||||| | | ||| ||||||||    
T  54822046 ccatagttttaaaactcggctcggtcatcgactcggcaggtgtactgggtcac 54822098  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 51229615 - 51229559
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcacagg 251  Q
    ||||||||||||||| ||||| |||| ||||||||||| || ||| |||||||||||    
T  51229615 accatagttttaaaactcggaccggtgatcgactcggtcagggtactgggtcacagg 51229559  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 6516825 - 6516864
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaaga 236  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  6516825 catagttttaaaaatcggatcgatcgtcgactcggtaaga 6516864  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 21635436 - 21635401
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggt 232  Q
    |||||||||||||||||| |||||||||||||||||    
T  21635436 catagttttaaaaatcggctcggtcatcgactcggt 21635401  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 45104214 - 45104163
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||| ||||||||    
T  45104214 catagttttaaaactcggaccggtgatcgaatcggtaagagtactgggtcac 45104163  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 11412594 - 11412544
Alignment:
Q  198 atagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    |||||||||||| |||| |||||||||||||||| ||| ||| ||||||||    
T  11412594 atagttttaaaactcggctcggtcatcgactcggcaagggtattgggtcac 11412544  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 42217264 - 42217214
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtca 247  Q
    ||||||||||||| |||| |||||||||||||||||||  ||| |||||||    
T  42217264 catagttttaaaactcggctcggtcatcgactcggtaaaggtactgggtca 42217214  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 48884365 - 48884332
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcg 230  Q
    |||| |||||||||||||||||||||||||||||    
T  48884365 cataattttaaaaatcggatcggtcatcgactcg 48884332  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 44201109 - 44201145
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  44201109 catagttttaaaactcggctcggtcatcgactcggta 44201145  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 51537293 - 51537241
Alignment:
Q  196 ccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtcac 248  Q
    |||||||||||||| |||| |||||||||||||||| | | ||| ||||||||    
T  51537293 ccatagttttaaaactcggctcggtcatcgactcggcaggggtattgggtcac 51537241  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 53605776 - 53605812
Alignment:
Q  194 aaccatagttttaaaaatcggatcggtcatcgactcg 230  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  53605776 aaccatagttttaaaactcggatcggacatcgactcg 53605812  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 7976 - 7941
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggt 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7976 catagttttaaaaatcggaccggtcatcgactcggt 7941  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 31008643 - 31008604
Alignment:
Q  192 acaaccatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  31008643 acaaccatagttttaaaattcggttcggtcatcgactcgg 31008604  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 38968769 - 38968714
Alignment:
Q  192 acaaccatagttttaaaaatcggatcggtcatcgactcggtaagagtagtgggtca 247  Q
    |||| |||||||||||||||| || || |||| ||||||||||| |||||||||||    
T  38968769 acaagcatagttttaaaaatcagaccgatcattgactcggtaagggtagtgggtca 38968714  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 41726463 - 41726427
Alignment:
Q  195 accatagttttaaaaatcggatcggtcatcgactcgg 231  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  41726463 accatagttttaaaactcggctcggtcatcgactcgg 41726427  T

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Target: scaffold0712 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 5030 - 4994
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  5030 catagttttaaaactcggctcggtcatcgactcggta 4994  T

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Target: scaffold0709 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 5050 - 5014
Alignment:
Q  197 catagttttaaaaatcggatcggtcatcgactcggta 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  5050 catagttttaaaactcggctcggtcatcgactcggta 5014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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