View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_18 (Length: 246)
Name: NF2615_low_18
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 6490618 - 6490840
Alignment:
| Q |
15 |
cagactataagttgaaactgatagagcagaagtttatgtggctaggattaatatttctatgcttgatattggagcagaaaattgtgtcttccgttaacat |
114 |
Q |
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| T |
6490618 |
cagactataagttgaaactgatagagcagaagtttatgtggctaggattaatatttctatgcttgatattggagcagaaaattgcgtcttccgttaacat |
6490717 |
T |
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| Q |
115 |
gttgcaatatttagttcctgtacagtaaaaacaagtccgtgtcttctacttctaatcttgtatacatgattgtttaactttgacgtacaattgtacttct |
214 |
Q |
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| T |
6490718 |
gttgcaatatttagttcatgtacagtaaaaacaagtccatgtcttctacttctaatcttgtatacatgattgtttaactttgacgtacaattgtacttct |
6490817 |
T |
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| Q |
215 |
acagaagctggaggtattgtctc |
237 |
Q |
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| T |
6490818 |
acagaagctggaggtattgtctc |
6490840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 38700058 - 38699841
Alignment:
| Q |
19 |
ctataagttgaaactgatagagcagaagtttatgtggctagga------ttaatatttctatgcttgatattggagcagaaaattgtgtcttccgttaac |
112 |
Q |
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| T |
38700058 |
ctataaattgaaactgatagtgcagaaatttatgtggctaggcctagggttaatatttctatgcttgagattggagcagaaaattgcgtcttccgttaac |
38699959 |
T |
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| Q |
113 |
atgttgcaatatttagttcctgtacagtaaaaacaagtccgtgtcttctacttctaatcttgtatacatgattgtttaactttgacgtacaattgtactt |
212 |
Q |
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| T |
38699958 |
atgctgcaatattgagttcc-ctacagtaaaaacaagtccgtgtcttcaacttctaatct--tatacatgattgtttaactttg----acaattgtactt |
38699866 |
T |
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| Q |
213 |
ctacagaagctggaggtattgtctc |
237 |
Q |
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| T |
38699865 |
ctacagaagctggaggtattgtctc |
38699841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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