View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_2 (Length: 556)
Name: NF2615_low_2
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Original strand, 47628052 - 47628449
Alignment:
| Q |
5 |
tgtcgaagaatatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcccatggaaccagcattt |
104 |
Q |
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| T |
47628052 |
tgtccaagaaaatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcccatggaaccagcattt |
47628151 |
T |
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| Q |
105 |
ttcatgcacggcaggacgagaagaaattcaggccattcagctggacatgaatcatattcaggtcattccaccaactattccctctcctcctccagtgtat |
204 |
Q |
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| T |
47628152 |
ttcatgcacggcaggacgagaagaaattcaggccattcagctggacatgaatcatattcaggtcattccaccaactattccctctcctcctccagtgtat |
47628251 |
T |
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| Q |
205 |
gtcctcgatagtcgtctttcatactatattagtacttctgtttacaacactcacgcattttgtgcaccaaccatgcttgtgttataccccggtggccggt |
304 |
Q |
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| T |
47628252 |
gtcctcgatagtcgtctttcatactatattagtacttctgtttacaacactcacgcattttgtgcaccaaccatgcttgtgttataccccggtggccggt |
47628351 |
T |
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| Q |
305 |
ggtgtctcattcacatatgtgtctataatctatatctgtatatacaagtcaaaaaatgtttgtaattttatatgtaaatcatgttttgttattaataaaa |
404 |
Q |
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| T |
47628352 |
ggtgtctcattcacatatgtgtcta-------------tatatacaaatcaaaaaatgtttgtaattttatatgtaaatcatgttttgttattaataaaa |
47628438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 401 - 537
Target Start/End: Original strand, 47628468 - 47628604
Alignment:
| Q |
401 |
aaaatatgaacattatttaattgcaattttgatttcctaaatttagattatatgggactttgattcctaagttttctttttcaagtcaaccagatattct |
500 |
Q |
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| T |
47628468 |
aaaatatgaacattatttaatttcaattttgatttcctaaatttagattatatgggactttgattcctaagttttctttttcaagtcaactagatatgct |
47628567 |
T |
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| Q |
501 |
tattttcataatgaaactaacttggccttgctatcaa |
537 |
Q |
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| T |
47628568 |
tatttttataatgaaactaaattggccttgctatcaa |
47628604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 47619875 - 47619958
Alignment:
| Q |
5 |
tgtcgaagaatatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattgaaatgccatttcc |
88 |
Q |
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| T |
47619875 |
tgtccaagaaaatccaaatgctagacctacaatggcaacagtcgtttcatatcttactaatcactcacttgaactgccatttcc |
47619958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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