View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_5 (Length: 468)
Name: NF2615_low_5
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 159 - 457
Target Start/End: Original strand, 3323400 - 3323698
Alignment:
| Q |
159 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaannnnnnngactcctgaaatcaaggaccaaagt |
258 |
Q |
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| T |
3323400 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaatttttttgactcctgaaatcaaggaccaaagt |
3323499 |
T |
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| Q |
259 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttacttc |
358 |
Q |
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| T |
3323500 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttacttc |
3323599 |
T |
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| Q |
359 |
atataatgatgagtgtgtataaagcattttcttcaaagccttcccatcccattctatagagaactcttgtgcaatatcatataataaccctatcttcat |
457 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3323600 |
atataatgatgggtgtgtataaagcattttcttcaaagccttaccatcccattctatagagaactcttgtgcaatatcatataataaccttatcttcat |
3323698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3323256 - 3323337
Alignment:
| Q |
15 |
tcaaatgatgcataggtggagaaaatgttggatatttaaaagttggaataccaaaattgtgaataatgtaaaactagggaac |
96 |
Q |
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| T |
3323256 |
tcaaatgatgcataggtggagaaaatgttggatatttaaaagttggaataccaaaattgtgaataatgtaaaactagggaac |
3323337 |
T |
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