View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_7 (Length: 434)
Name: NF2615_low_7
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 34274179 - 34273821
Alignment:
| Q |
16 |
agcagagaggtttttatttaaggaagacaaatctctaattgtattgttgtggtttctgaagccattaatgttataaacaagaagagctttgctcgtaaat |
115 |
Q |
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| T |
34274179 |
agcaaagaggtttttattcaagaaagacaaatctctgattgtattgt---ggtttctaaggccattaatgttataaacaaaaagagattttctagtaatt |
34274083 |
T |
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| Q |
116 |
tgacacttaaaattaatatcagaaaggatttcgatactttggaccggaacttctttcttgatgtgcttgcttgctttacttttggccccattttctgtaa |
215 |
Q |
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|||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
34274082 |
tgactcttaaaattaatttcagaaaggattttaataatttggaccggaacttctttcttcatgtgcttgctcgctttacttttggccccattttctgtaa |
34273983 |
T |
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| Q |
216 |
cttgattaaggaaatcttacactaa----gnnnnnnnacacacannnnnnncttcttttatttaaatatatgaacacttgacagaggattagagaatact |
311 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34273982 |
cttgattaaggaaatcttacactaaacccacacacacacacacatttttttcttcttttatttaaatatatgaacacttgacagaggattagagaatact |
34273883 |
T |
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| Q |
312 |
aagaggtgtcaacctt-ttagagaatactattctgtttgatgtcattatgattttggcttcg |
372 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34273882 |
aagaggtgtcaaccttgttagagaatactattctgtttgatgtcattatgattttggcttcg |
34273821 |
T |
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