View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_8 (Length: 390)
Name: NF2615_low_8
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_8 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 30415923 - 30415543
Alignment:
| Q |
1 |
aatggaaggtgcgtagaaaattttctacatgggaaatagaatagaagttaacgtgtatggaagatggaaaggtgtcttaacgctgaatttcaaatgaagc |
100 |
Q |
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| T |
30415923 |
aatggaaggtgcgtagaaaattttctacatgggaaatagaatagaagttaacgtgtatggaagatggaaaggtgtcttaacgctgaatttcaaatgaagc |
30415824 |
T |
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| Q |
101 |
atagtagctagtcatttcatgtgcgttactatgcgtgttcatcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttggcaatt |
200 |
Q |
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| T |
30415823 |
atagtagctagtcatttcatgtgcgttactatgtgtgttcatcagctggccatttaatgtgtgttcccaacaattgtttagggtcaagggtttcgtaatt |
30415724 |
T |
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| Q |
201 |
agggttgcat-----aaacgtctactcaata--aataagaataagaataaagataaagatgatacttcnnnnnnnaagtttagtcgctataccccaatag |
293 |
Q |
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| T |
30415723 |
agggttgcatgtctgctaggattaaataataagaataagaataagaataaggataaagatgatactt-tttttttatgtttagtcgttataccccaatag |
30415625 |
T |
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| Q |
294 |
tatgaaaaagtttttcataaacgtctactcaaattttactatcaacagtgtgaattaattttgagatgtaatactacaacat |
375 |
Q |
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| T |
30415624 |
tatgaaaaagtttttcataaatgtctactcaaattttattattaatagtgtgaattaattttgagatgtaatactacaacat |
30415543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 77631 - 77785
Alignment:
| Q |
3 |
tggaaggtgcgtagaaaattttctacatgggaaatagaatagaagttaacgtgtatggaagatggaaaggtgtctt-aacgctgaatttcaaatgaagca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
77631 |
tggaaggtgcgtagaaaattttctacatgggaaatagaatagaagttaacgtgtatggaagatggagaggtgtctttaacgctgaatttcaaatgaagca |
77730 |
T |
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| Q |
102 |
tagtagctagtcatttcatgtgcgttactatgcgtgttcatcagctggccattta |
156 |
Q |
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| T |
77731 |
tagtagctagtcatttcatgtgcgttactatgcgtgttcatcagctggccattta |
77785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 77782 - 77815
Alignment:
| Q |
177 |
tttagggtcaagggtttggcaattagggttgcat |
210 |
Q |
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| T |
77782 |
tttagggtcaagggtttggcaattagggttgcat |
77815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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