View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2615_low_9 (Length: 340)
Name: NF2615_low_9
Description: NF2615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2615_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 50228507 - 50228836
Alignment:
| Q |
11 |
gagaagaatctagggttgttaatgatattggaaactcaaggaaagaatcttagagggggaagaataagtagtagttgttgattgtgagagaagaacaacc |
110 |
Q |
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| T |
50228507 |
gagaagaatctagggttgttaatgatattggaaactcagggaaagaatcttagagggggaagaataagtagtagttgttgattgtgagagaagaacaacc |
50228606 |
T |
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| Q |
111 |
tgaattggagagacgttgttgcagttgcgaatgagagcatatgtttgtcatctcatctacctcatcgacatttttgaattttgaacgatactgttactat |
210 |
Q |
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| T |
50228607 |
tgaattggagagacgttgttgcagttgcaaatgagagcatatgtttgtcatctcatctacctcatcgacatttttgaattttgaacgatactgttactat |
50228706 |
T |
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| Q |
211 |
aatatacctctcgctgctaaaaaactatattaagtattaacaatcatcccttcaatccaccaagaatgaaaatctacaacaaaaatcaatctatgattgt |
310 |
Q |
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| T |
50228707 |
aatatacctcccgctgctaaaaaactatattaagtattaacaatcatcccttcaatccaccaagaatgaaaatctacaacaaaaatcaatctatgattgt |
50228806 |
T |
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| Q |
311 |
tcaaacactaccatgattggagtttgatac |
340 |
Q |
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| T |
50228807 |
tcaaacactaccatgattggagtttgatac |
50228836 |
T |
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