View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2616_high_4 (Length: 234)
Name: NF2616_high_4
Description: NF2616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2616_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 3234107 - 3234323
Alignment:
| Q |
18 |
atgatggtggcagccttatgtagttgtgtgtgacaacgacaataataatgtcggcagcgactgacaacaatgatgtaaagtacaacaactacgtcgaagg |
117 |
Q |
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| T |
3234107 |
atgatggtggcagccttatgtagttgtgtgtgacaacgacaataataatgtcggcagcgactgacaacaatgatgtaaagtacaacaactacgtcgaagg |
3234206 |
T |
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| Q |
118 |
caagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagctttgttcatctccggtgattttttctctctta |
217 |
Q |
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| T |
3234207 |
caagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagctttgttcatctccggtgattttttctctctta |
3234306 |
T |
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| Q |
218 |
ggggatattttttactt |
234 |
Q |
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||||||||||||||||| |
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| T |
3234307 |
ggggatattttttactt |
3234323 |
T |
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