View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2616_low_2 (Length: 421)
Name: NF2616_low_2
Description: NF2616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2616_low_2 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 22064633 - 22064245
Alignment:
| Q |
19 |
acatgagttattctggacactgacaaaacattcgacatcg-caacccatcaacatgaggtgtcggtgtttcataatcatgcatcctattcatgataaaac |
117 |
Q |
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||||||||||| ||||||| ||||||||||| ||||| | ||| ||||| | |||| ||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
22064633 |
acatgagttatgctggacaacgacaaaacattggacattgacaaaccatcgatatgaagtgtcagtgtttcataatcatgcatcatattcatgctaaaac |
22064534 |
T |
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| Q |
118 |
atacctcgtaaacaaagtcttctatgtggaaccagtatgcatctatgcacaaaaactctgattcagagagtgcttttatcggaaaatacgaacaccaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22064533 |
atacctcgtaaacaaagtcttctatgtggaaccagtatgcatctatgcacaaagactcggattcagagagtgctttcatcggaaaatacgaacaccaatt |
22064434 |
T |
|
| Q |
218 |
tgtt-aaaacggcattagattcatagctattcactatgatttttggcaagttgatcttagggacaaagtgacagagatgagtccatctcttgaacaaaat |
316 |
Q |
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|||| |||| || |||| ||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
22064433 |
tgttaaaaagggaattatattcatagccattcac-------tttggcaagttgatctcagggacaaagtgacatagatgagtccatcttttggacaaaat |
22064341 |
T |
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| Q |
317 |
gcttgtggcaactgcctctttggttgtgaataaagagaga---------atgatgatattgtcaggtaagctactgatcatatccatcggtaccgc |
403 |
Q |
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|||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
22064340 |
gcttgtggaaactgcctctttggttgtgagtaaagagagaatgcagaagatgatgatattgtcagctaagctactgatcatatccatcggcaccgc |
22064245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 230 - 403
Target Start/End: Complemental strand, 22054646 - 22054464
Alignment:
| Q |
230 |
attagattcatagctattcactatgatttttggcaagttgatcttagggacaaagtgacagagatgagtccatctcttgaacaaaatgcttgtggcaact |
329 |
Q |
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||||||||| | ||||||||||||||| || | |||| ||||||||| ||||||||||| |||||||||||||| ||| ||||||| |||||||||| | |
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| T |
22054646 |
attagattcgtcgctattcactatgatgttggtgaagtcgatcttaggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaat |
22054547 |
T |
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| Q |
330 |
gcctctttggttgtgaataaagagagaat---------gatgatattgtcaggtaagctactgatcatatccatcggtaccgc |
403 |
Q |
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|||||||||||||| | |||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
22054546 |
gcctctttggttgtaagtaaagagagaatgcagaagacgatgatattgtcgggtaagttactgatcatatccatcggcaccgc |
22054464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 22076064 - 22075955
Alignment:
| Q |
103 |
tattcatgataaaacatacctcgtaaacaaagtcttctatgtggaaccagtatgcatctatgcacaaaaactctgattcagagagtgcttttatcggaaa |
202 |
Q |
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||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
22076064 |
tattcatagtaaaatataccttgtaaacaaagtcttgtatgtggaaccagtatgcatctatgcacaaagactctgattcagagagtgctttcatcagaaa |
22075965 |
T |
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| Q |
203 |
atacgaacac |
212 |
Q |
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|||||||||| |
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| T |
22075964 |
atacgaacac |
22075955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 22055291 - 22055153
Alignment:
| Q |
71 |
atgaggtgtcggtgtttcataatcatgcatcctattcatgataaaacatacctcgtaaacaaagtcttctatgtggaaccagtatgcatctatgcacaaa |
170 |
Q |
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|||| ||||||||||| |||| |||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
22055291 |
atgaagtgtcggtgttagataagcatgcatcatattcataataaaacatacctcgtaaataaagtcttcaa------accagtatgcatctatgcacaaa |
22055198 |
T |
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| Q |
171 |
aactctgattcagagagtgcttttatcggaaaatacgaacaccaa |
215 |
Q |
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| T |
22055197 |
tactctgatttagagagtgctttcatcggaaaatacgaagaccaa |
22055153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 6444 - 6567
Alignment:
| Q |
92 |
atcatgcatcctattcatgataaaacatacctcgtaaacaaagtcttctatgtggaaccagtatgcatctatgcacaaaaactctgattcagagagtgct |
191 |
Q |
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|||| ||||| |||| || ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||| | |||||||| |
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| T |
6444 |
atcacgcatcatattaataataaaacatacctcgtaaacaaagtattctatgttgaaccagtgtgcatctatgcacaaacactctgatttatagagtgct |
6543 |
T |
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| Q |
192 |
tttatcggaaaatacgaacaccaa |
215 |
Q |
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|| ||| ||||||| ||||||||| |
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| T |
6544 |
ttcatctgaaaatatgaacaccaa |
6567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 395
Target Start/End: Original strand, 7091 - 7282
Alignment:
| Q |
214 |
aatttgttaaaac-ggcattagattcatagctattcactatgatttttggcaagttgatcttagggacaaagtgacagagatgagtccatctcttgaaca |
312 |
Q |
| |
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||||||||||||| || ||||||||| |||||||||||| ||| || | |||| ||| || || ||||||||||| |||| ||||||||||||| ||| |
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| T |
7091 |
aatttgttaaaactggaattagattcgtagctattcactgagatgttagtgaagtcgattttcggaacaaagtgacatagattagtccatctcttggaca |
7190 |
T |
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| Q |
313 |
aaatgcttgtggcaactgcctctttggttgtgaataaagagaga---------atgatgatattgtcaggtaagctactgatcatatccatc |
395 |
Q |
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||||||||||||| || ||||||||||| |||| ||| | |||| |||||||||| |||||||||| ||||||||||||||||| |
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| T |
7191 |
aaatgcttgtggctaccgcctctttggtggtgactaatgggagaatgcagaagatgatgatatcgtcaggtaagttactgatcatatccatc |
7282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 32245879 - 32245831
Alignment:
| Q |
288 |
cagagatgagtccatctcttgaacaaaatgcttgtggcaactgcctctt |
336 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
32245879 |
cagagatgagtccatctctttgacaaaatgcttgtggcagctgcctctt |
32245831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 35766394 - 35766326
Alignment:
| Q |
291 |
agatgagtccatctcttgaacaaaatgcttgtggcaactgcctctttggttgtgaataaagagagaatg |
359 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||| ||||||| ||| | || |||||||||||| |
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| T |
35766394 |
agatgagtccatctcttggacaaaacgcttgtggcaacggcctcttgggtggagacaaaagagagaatg |
35766326 |
T |
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