View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2616_low_3 (Length: 267)
Name: NF2616_low_3
Description: NF2616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2616_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 30737934 - 30737669
Alignment:
| Q |
2 |
ggatgtcgaagaatatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaa |
101 |
Q |
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| T |
30737934 |
ggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaa |
30737835 |
T |
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| Q |
102 |
tgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaaaaggaaatttttcctttgtattgagtacgtagta |
201 |
Q |
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| T |
30737834 |
tgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaagaggaaatttttcctttgtattgagtacgtagta |
30737735 |
T |
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| Q |
202 |
atctcaacaagtttgtgcatttatcaagaaggtatttcttgatgcaaatttgacacacttaaatag |
267 |
Q |
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| T |
30737734 |
atctcaacaagtttctgcatttatcaagaaggtatttcttgatgtaaatttgacacacttaaatag |
30737669 |
T |
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