View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2617_low_1 (Length: 630)
Name: NF2617_low_1
Description: NF2617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2617_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 17 - 622
Target Start/End: Original strand, 45399986 - 45400589
Alignment:
| Q |
17 |
attaacaatgcacactatgttgggttccgtaacagaaatgcagaagcaagctattgaagttaatagtacgtgacgtaataaatatatgtaaagaaaaagt |
116 |
Q |
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| T |
45399986 |
attaacaatgcacactatgttgggttccgtaacagaaatgcagaagc----tattgaagttaatagtacgtgacgtgataaatatatgtaaagaaaaagt |
45400081 |
T |
|
| Q |
117 |
gagtctggcataaatgatgctagaataaaaataaaagcaattaagttaagataggaaattcaaagaagagaaagtgacaccattaaaaggaaaaacccgt |
216 |
Q |
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| T |
45400082 |
gagtctgacataaatgatactagaataaaaataaaagcaattaagttaagataggaaattcaaagaagagaaagtgacaccattaaaaggaaaaacccgt |
45400181 |
T |
|
| Q |
217 |
ctaattagaaggattaaagagattggagtcggtagagtgggtagtgcgtagtcacatttttgtattcttccatggactaagatgcaagccataaaggaaa |
316 |
Q |
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| T |
45400182 |
gtaattagaaggattaaagagattggagtcggtagagtgggtagtgcgtagtcacatttttgtattcttccatggactaagatgcaagccataaaggaaa |
45400281 |
T |
|
| Q |
317 |
actagttaagacttctgagtctcataatgtgaagttttggtgtaatgttagatttgaatatgatgtcatcatgctaacattgaccagaaagtaccattac |
416 |
Q |
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| T |
45400282 |
accagttaagacttctgagtctcataatgtgaagttttggtgtaatgttagatttgaatatgatgtcatcatgctaacattgaccagaaagtaccattac |
45400381 |
T |
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| Q |
417 |
attaattcaatgccaaaattttcaataagtgagatgttgatttaataagttcaattttgtttttgtcaaactttgatttgggaatggcactataagtaat |
516 |
Q |
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| T |
45400382 |
attaattcaatgccaaaattttcaataagtgagatgttgatttaataagttcaattttgtttttgtcaaactttgatttgggaatggcactataagtaat |
45400481 |
T |
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| Q |
517 |
gtttccatgacttatagacatttccaaccctgccctgcgcaa--ttgtgttaagctcatggataacaattatatactattttttgtgattaatcaactat |
614 |
Q |
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| T |
45400482 |
gtttccatgacttatagacatttcgaaccctgccctgcgcaactgtgtgttaagctcatgggtaacaattatatactattttttgtgattaatcaactat |
45400581 |
T |
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| Q |
615 |
agtataat |
622 |
Q |
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| T |
45400582 |
agtataat |
45400589 |
T |
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