View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2617_low_2 (Length: 462)
Name: NF2617_low_2
Description: NF2617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2617_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 14073359 - 14073624
Alignment:
| Q |
16 |
aaatatatattaaacattaatttaaggttatttgttttagttggtgaactaatgattcttctatggtaaggattctctttatttttaaaaaacaatgaag |
115 |
Q |
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| T |
14073359 |
aaatatatattaaacattaatctaaggttgtttgttttagttggtgaactaatgattcttctatggtaaggattctctttatttttaaaaaacaatgaag |
14073458 |
T |
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| Q |
116 |
atttcgttactaatgttttgactttataaagttttaatataattttcttccnnnnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaact |
215 |
Q |
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| T |
14073459 |
atttcgttactaatgttttgactttataaagttttaatataattttcttcc-ataaaaaagttttaatataacaaaatacatgtgaccgtttttaaaact |
14073557 |
T |
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| Q |
216 |
atttatagagtaattcttgtggtagcacaacaatttggacacctc-ttttggtcacaaacacaaaaa |
281 |
Q |
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| T |
14073558 |
atttatagagtaattcttgtggtagcacaacaatttggacacctctttttgatcacaaacacaaaaa |
14073624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 14080836 - 14081099
Alignment:
| Q |
16 |
aaatatatattaaacattaatttaaggttatttgttttagttggtgaactaatgattcttctatggtaaggattctctttatttttaaaaaacaatgaag |
115 |
Q |
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| T |
14080836 |
aaatatatattaaacattaatctaaggttgtttgttttagttggtgaactaatgattcttctatggtaaggattctctttatttttaaaaaacaatgaag |
14080935 |
T |
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| Q |
116 |
atttcgttactaatgttttgactttataaagttttaatataattttcttccnnnnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaact |
215 |
Q |
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| T |
14080936 |
atttcgttactaatgttttgactttataaagttttaatataa-tttcttcc--ataaaaagttttaatataacaaaatacatgtgaccgtttttaaaact |
14081032 |
T |
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| Q |
216 |
atttatagagtaattcttgtggtagcacaacaatttggacacctc-ttttggtcacaaacacaaaaa |
281 |
Q |
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| T |
14081033 |
atttatagagtaattcttgtggtagcacaacaatttggacacctctttttgatcacaaacacaaaaa |
14081099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 14073695 - 14073744
Alignment:
| Q |
326 |
tatttcttttgactgatatcatgaccacacataacaaggtatgcagtgtt |
375 |
Q |
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| T |
14073695 |
tatttcttttgactgatatcatgaccacacataacaaggtatgcagtgtt |
14073744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 14081171 - 14081220
Alignment:
| Q |
326 |
tatttcttttgactgatatcatgaccacacataacaaggtatgcagtgtt |
375 |
Q |
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| T |
14081171 |
tatttcttttgactgatatcatgaccacacataacaaggtatgcagtgtt |
14081220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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