View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2617_low_5 (Length: 337)
Name: NF2617_low_5
Description: NF2617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2617_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 14104352 - 14104178
Alignment:
| Q |
13 |
cagaagcagcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacccaaaacagcataccc |
112 |
Q |
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| T |
14104352 |
cagaagcagcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacacaaaacagcataccc |
14104253 |
T |
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| Q |
113 |
nnnnnnnccaaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
187 |
Q |
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| T |
14104252 |
aaaaaaaccaaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
14104178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 14104115 - 14104046
Alignment:
| Q |
250 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagt |
319 |
Q |
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| T |
14104115 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagt |
14104046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 14092691 - 14092607
Alignment:
| Q |
13 |
cagaagcagcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacc |
97 |
Q |
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||||||||||||| |||||| |||| |||||||| || | ||||||||||||||||| ||| ||||||| || ||||||||||| |
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| T |
14092691 |
cagaagcagcagaaagtttaacaaattcccaaagcccagaaaaagcctccatagaaaacccattccaagtcaaaggacaaccacc |
14092607 |
T |
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