View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2617_low_6 (Length: 295)
Name: NF2617_low_6
Description: NF2617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2617_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 45274149 - 45273870
Alignment:
| Q |
1 |
ctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggta-ccgttg |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45274149 |
ctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaaccgttg |
45274050 |
T |
|
| Q |
100 |
acttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274049 |
acttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatc |
45273950 |
T |
|
| Q |
200 |
agacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273949 |
agacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagat |
45273870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 45282392 - 45282114
Alignment:
| Q |
1 |
ctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
45282392 |
ctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctcgggtaccgttga |
45282293 |
T |
|
| Q |
101 |
cttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatca |
200 |
Q |
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| T |
45282292 |
cttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattactgcagacggatca |
45282193 |
T |
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| Q |
201 |
gacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282192 |
gacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagat |
45282114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 45293732 - 45293462
Alignment:
| Q |
1 |
ctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || |||||||||||||||| |
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| T |
45293732 |
ctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttga |
45293633 |
T |
|
| Q |
101 |
cttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatca |
200 |
Q |
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|||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||| |||| | | |||||||||||||||||||||||||| ||| |
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| T |
45293632 |
tttcatctttggaacatctgccaccttgatccaagactctacgatcatcgtaagaatgccttccccaaatcaattcaacacaattaccgcagacgggtca |
45293533 |
T |
|
| Q |
201 |
gacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttccc |
271 |
Q |
| |
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|| || || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
45293532 |
tacgtgaataaattgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccc |
45293462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 45302692 - 45302422
Alignment:
| Q |
1 |
ctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || |||||||||||||||| |
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| T |
45302692 |
ctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttga |
45302593 |
T |
|
| Q |
101 |
cttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaagcctggcaaagggcaattcaacacaattaccgcagacggatca |
200 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||| |||| | | |||||||||||||||||||||||||| ||| |
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| T |
45302592 |
tttcatctttggaacatctgccaccttgatccaagactctacgatcatcgtaagaatgccttccccaaatcaattcaacacaattaccgcagacgggtca |
45302493 |
T |
|
| Q |
201 |
gacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttccc |
271 |
Q |
| |
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|| || || ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
45302492 |
tacgtgaataaattgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccc |
45302422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 45270622 - 45270466
Alignment:
| Q |
1 |
ctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaccgttga |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| ||||||||| | ||||||||| ||| || |||| |||||| |||| |
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| T |
45270622 |
ctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattga |
45270523 |
T |
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| Q |
101 |
cttcatctttggatcatctgctaccttgatccaacactctacaatcattgtaagaaa |
157 |
Q |
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||||||||||||| ||||||| |||||||||||| |||||| ||||| || ||||| |
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| T |
45270522 |
cttcatctttggaacatctgccaccttgatccaaagctctaccatcatcgtgagaaa |
45270466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 45270409 - 45270341
Alignment:
| Q |
208 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaa |
276 |
Q |
| |
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||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
45270409 |
tgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaa |
45270341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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