View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2617_low_8 (Length: 220)

Name: NF2617_low_8
Description: NF2617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2617_low_8
NF2617_low_8
[»] chr3 (3 HSPs)
chr3 (1-211)||(25040608-25040818)
chr3 (1-206)||(25044346-25044551)
chr3 (1-167)||(54479372-54479538)
[»] chr2 (3 HSPs)
chr2 (1-173)||(21393062-21393234)
chr2 (1-204)||(21422341-21422548)
chr2 (74-182)||(1975174-1975282)
[»] chr4 (2 HSPs)
chr4 (1-175)||(10124222-10124396)
chr4 (38-140)||(28649860-28649962)
[»] chr1 (1 HSPs)
chr1 (10-208)||(24690546-24690744)
[»] chr7 (3 HSPs)
chr7 (46-119)||(39600467-39600540)
chr7 (46-122)||(40279823-40279899)
chr7 (46-122)||(40458451-40458527)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 25040608 - 25040818
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25040608 taaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 25040707  T
Q  101 acataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttgacaattctggattcat 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  25040708 acagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttggcaattttggattcat 25040807  T
Q  201 caaaatctgtg 211  Q
    |||||| ||||    
T  25040808 caaaatttgtg 25040818  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 25044346 - 25044551
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 100  Q
    |||||||| ||||| |||||||| | || ||||||  |||| ||||||||||||||||||||||||| ||| ||||||||||| |  |||||||||| ||    
T  25044346 taaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaaca 25044445  T
Q  101 acataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttgacaattctggattcat 200  Q
     || ||||||||||||||||||||| |||||||| ||||| | ||| || ||||| |||||||  |||||||||| |||| ||| ||||  |||||||||    
T  25044446 gcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgttttctttgttgcaatgcacacatcttggcaatcttggattcat 25044545  T
Q  201 caaaat 206  Q
    ||||||    
T  25044546 caaaat 25044551  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 54479538 - 54479372
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 100  Q
    ||||||||||||||||||||||| |||  |||||   || |||  ||||| ||||||||||  |||| | || |||| || ||||  |||||||| |  |    
T  54479538 taaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaata 54479439  T
Q  101 acataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgatt 167  Q
    ||| ||||| ||| |||||| ||  |||||| |||||||| ||||| || ||||| |||| ||||||    
T  54479438 acagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgatt 54479372  T

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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21393234 - 21393062
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 100  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  21393234 taaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatttgtcccagca 21393135  T
Q  101 acataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatg 173  Q
    | | |||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||    
T  21393134 atagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgattgcaatg 21393062  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 21422548 - 21422341
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtccc---- 96  Q
    ||||||||| ||||||||||||| |  ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||        
T  21422548 taaagaactgtattcttggcacctgtgcgatgatgattgttatacttgcaaaaatacttcaaatgttcaagcttgcaacaaccaagcatttgtcccggcc 21422449  T
Q  97 agcaacataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttgacaattctggat 196  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |  || || ||||| ||||||||||||||||||| |||||| | ||||| |||||    
T  21422448 agcaacagaaacaaccaatagatattctttttcttctcagcaattattggcttgacactgttttcttgattgcaatgcacacatttaggcaattttggat 21422349  T
Q  197 tcatcaaa 204  Q
    ||||||||    
T  21422348 tcatcaaa 21422341  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 1975174 - 1975282
Alignment:
Q  74 tgcaacaaccaattatttgtcccagcaacataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatg 173  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||| ||||||||||||    
T  1975174 tgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaatg 1975273  T
Q  174 caaacattt 182  Q
     | ||||||    
T  1975274 tacacattt 1975282  T

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Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 10124222 - 10124396
Alignment:
Q  1 taaagaactctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagca 100  Q
    |||||||| |||||||||||||| | ||||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||  |||||||| ||||    
T  10124222 taaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagca 10124321  T
Q  101 acataaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgca 175  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||||||||||||    
T  10124322 acagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttgattgcaatgca 10124396  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 28649860 - 28649962
Alignment:
Q  38 tgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacataaacaaccaattgatattctttttcttctcagc 137  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||||  |||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  28649860 tgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagc 28649959  T
Q  138 aat 140  Q
    |||    
T  28649960 aat 28649962  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 24690546 - 24690744
Alignment:
Q  10 ctattcttggcaccagatcgatgatgactgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacataaaca 109  Q
    ||||| |||||||  | |||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||| ||||||| ||| |||| |||||    
T  24690546 ctatttttggcacttgttcgatgatgattgttatacttgcaaaaataccttaattattcatgcttgcaacaaccaatcatttgtctcagaaacagaaaca 24690645  T
Q  110 accaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttgacaattctggattcatcaaaatct 208  Q
    | ||||||||||||||||||||||||  ||| ||||| || ||| |  |||||||||||||||| | |||||||||||||  |||||||||||||||||    
T  24690646 atcaattgatattctttttcttctcaataattaccggcttcacattggtttcttgattgcaatgtacacattttgacaatcttggattcatcaaaatct 24690744  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 39600467 - 39600540
Alignment:
Q  46 ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacataaacaaccaattgat 119  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||| || || |||| ||||| |||||||||||||||    
T  39600467 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat 39600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 40279823 - 40279899
Alignment:
Q  46 ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacataaacaaccaattgatatt 122  Q
    ||||| |||||||||||||| ||||| |||||||| || || ||||| |||| || ||  ||||||||||| |||||    
T  40279823 ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt 40279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 40458527 - 40458451
Alignment:
Q  46 ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacataaacaaccaattgatatt 122  Q
    ||||| |||||||||||||| ||||| |||||||| || || ||||| |||| || ||  ||||||||||| |||||    
T  40458527 ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt 40458451  T

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