View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2618_high_2 (Length: 256)
Name: NF2618_high_2
Description: NF2618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2618_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 37201024 - 37200794
Alignment:
| Q |
18 |
aacagtaactttaatcattgcaaaatcaggaatattagttggtctataaacattgaagttttgcatccaaacatcagtagtcaaatttgaaaaactctct |
117 |
Q |
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| T |
37201024 |
aacagtaactttaatcattgcaaaatcaggaatattagttggtctataaacattgaagttttgcatccaaacatcagtagtcaaatttgaaaaactctct |
37200925 |
T |
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| Q |
118 |
tctgcaactgatgtatatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattca |
217 |
Q |
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| T |
37200924 |
tctgcaactgatgtatatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaattacaagggaagggaacattcg |
37200825 |
T |
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| Q |
218 |
cccttttgtttttgttgttgttgatgatgat |
248 |
Q |
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| T |
37200824 |
cccttttgtttttgtcgttgttgatgatgat |
37200794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 37440466 - 37440380
Alignment:
| Q |
132 |
atatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattcac |
218 |
Q |
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| T |
37440466 |
atatgtatctcttggctgaagctcgtacagaaacgtgtgaccaagaaactcatcattgatgcaatcacaagggaatggaacattcac |
37440380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 37221386 - 37221325
Alignment:
| Q |
157 |
tagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattcac |
218 |
Q |
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| T |
37221386 |
tagagaaatgtgtgaccaagaaactcatcattgatgcaatcacaagggaagggaacattcac |
37221325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 37226859 - 37226799
Alignment:
| Q |
157 |
tagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattca |
217 |
Q |
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| T |
37226859 |
tagagaaatgtgtgaccaagaaactcatcattgatgcaatcacaagggaatggaacattca |
37226799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 37195894 - 37195849
Alignment:
| Q |
173 |
caagaaactctccattgatgcaatcacaagggaagggaacattcac |
218 |
Q |
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| T |
37195894 |
caagaaactcatcatggatgcaatcacaagggaatggaacattcac |
37195849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 37387091 - 37387135
Alignment:
| Q |
173 |
caagaaactctccattgatgcaatcacaagggaagggaacattca |
217 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
37387091 |
caagaaactcgtcattaatgcaatcacaagggaatggaacattca |
37387135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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