View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2618_low_1 (Length: 456)
Name: NF2618_low_1
Description: NF2618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2618_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 38083 - 38520
Alignment:
| Q |
18 |
catattatctttaaccttacaaatttcattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaagagagaacatgggtgtcattgtgtgag |
117 |
Q |
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| T |
38083 |
catattatctttaaccttacaaatttcattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaatagagaacatgagtgtcattgtgtgag |
38182 |
T |
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| Q |
118 |
tgagttttgtcttcaagtatcgtggtgaactatttatatgcctaattatatgatcaacaatatgtccttaaatgctaatatatgataactattcaatacc |
217 |
Q |
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| T |
38183 |
tgagttttgtcttcaaatatcgtggtgaactatttatatgcctaattatatgatcaacaatatgttcttaaatgctaatatatgataactattcaatacc |
38282 |
T |
|
| Q |
218 |
aatatatgtgttgatatgtctctaagtatgtgtttaatgtttatacttgttactattgaaatcatgtgaatatatgtgttgttctgtttacttatgttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38283 |
gatatatgtgttgatatgtctctaagtatgtgtttaatgtttatacttgttcctattgaaatcatgtgaatatatgtgttgttctgtttacttatgttct |
38382 |
T |
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| Q |
318 |
acctttcatggttttcggttacacatcattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38383 |
acctttcatggttttcggttacacatcattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaat |
38482 |
T |
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| Q |
418 |
ggttttgttttatgtgtcatgtacactttaacttgatg |
455 |
Q |
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| T |
38483 |
gtttttgttttatgtgtcatgtacactttaacttgatg |
38520 |
T |
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