View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2619_high_6 (Length: 225)
Name: NF2619_high_6
Description: NF2619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2619_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 37226693 - 37226887
Alignment:
| Q |
18 |
atttcaaaggtcatgcaatccaatgttgtttcaaaagctgaagatatttccatctacaacatttacacaatactaagcgttgatagtgtccaagtctata |
117 |
Q |
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| T |
37226693 |
atttcaaaggtcatgcaatccaatgttgtttcaaaagctgaagatatttccatctacaacatttacacaatactaagcgttgatagtgtccaagtctata |
37226792 |
T |
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| Q |
118 |
caagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttcgccacggagactcctatgct |
212 |
Q |
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| T |
37226793 |
caagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttcgccatggagactcctatgct |
37226887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 37221223 - 37221397
Alignment:
| Q |
18 |
atttcaaaggtcatgcaatccaatgttgtttcaaaagctgaagatatttccatctacaacatttaca-caatactaagcgttgatagtgtccaagtctat |
116 |
Q |
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| T |
37221223 |
atttcaaaggtcatgcaatccaatgttgtttcaaaagaagaagatattctcagctacaaca----cagcaattacaaacatagatgctatccaatccgat |
37221318 |
T |
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| Q |
117 |
acaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttcgcc |
195 |
Q |
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| T |
37221319 |
acaagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttcgcc |
37221397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 37440376 - 37440449
Alignment:
| Q |
119 |
aagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc |
192 |
Q |
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| T |
37440376 |
aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttc |
37440449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 37195842 - 37195895
Alignment:
| Q |
116 |
tacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttgg |
169 |
Q |
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| T |
37195842 |
tacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg |
37195895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 37387141 - 37387084
Alignment:
| Q |
118 |
caagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacac |
175 |
Q |
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| T |
37387141 |
caagactgaatgttccattcccttgtgattgcattaatgacgagtttcttggtcacac |
37387084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 37200826 - 37200885
Alignment:
| Q |
125 |
gaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctcta |
184 |
Q |
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| T |
37200826 |
gaatgttcccttcccttgtaattgcatcaatggagagtttcttgcttatacatttctcta |
37200885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 37387241 - 37387183
Alignment:
| Q |
18 |
atttcaaaggtcatgcaatccaatgttgtttcaaaagctgaagatatttccatctacaa |
76 |
Q |
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| T |
37387241 |
atttcaaacatcatgcaatccaatgttgtttcaaaacctctagatattttcagctacaa |
37387183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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