View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2620_high_17 (Length: 238)

Name: NF2620_high_17
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2620_high_17
NF2620_high_17
[»] chr3 (3 HSPs)
chr3 (17-238)||(32462369-32462590)
chr3 (184-228)||(9239949-9239994)
chr3 (195-233)||(29644890-29644929)
[»] chr1 (1 HSPs)
chr1 (185-228)||(37850579-37850622)
[»] chr2 (1 HSPs)
chr2 (183-225)||(31899079-31899121)
[»] chr7 (3 HSPs)
chr7 (184-228)||(47129505-47129549)
chr7 (184-233)||(47129226-47129275)
chr7 (183-227)||(30244489-30244534)
[»] chr6 (5 HSPs)
chr6 (180-233)||(16455038-16455092)
chr6 (184-233)||(2579087-2579136)
chr6 (184-233)||(2579850-2579899)
chr6 (183-233)||(2843686-2843737)
chr6 (186-233)||(5832007-5832054)
[»] chr4 (3 HSPs)
chr4 (186-225)||(44620798-44620838)
chr4 (184-233)||(36608636-36608686)
chr4 (184-228)||(44621138-44621180)
[»] chr8 (3 HSPs)
chr8 (183-233)||(5915998-5916048)
chr8 (183-233)||(8918742-8918791)
chr8 (185-233)||(37544469-37544517)
[»] chr5 (1 HSPs)
chr5 (196-233)||(41632913-41632950)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 32462369 - 32462590
Alignment:
Q  17 taatttagtaaaatgtttcttaaaaatggtgatttgatttgcttaccaattgaagccaagaagctaacagtattcacacgcatccaatatgattggatac 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32462369 taatttagtacaatgtttcttaaaaatggtgatttgatttgcttaccaattgaagccaagaagctaacagtattcacacgcatccaatatgattggatac 32462468  T
Q  117 aaaaacatgtactaatacagcctttttgatttgactcttttgattagttattagtacatgtacatgttgttggatcatgaggggagcttggggaccgtcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  32462469 aaaaacatgtactaatacagcctttttgatttgactcttttgattagttattagtacatgtacatgttgttggatcatgaggggagtttgggggccgtct 32462568  T
Q  217 acatcgaggctaaaacagtccc 238  Q
    ||||||||||||||||| ||||    
T  32462569 acatcgaggctaaaacaatccc 32462590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 9239994 - 9239949
Alignment:
Q  184 tgttggatcatgaggggagctt-ggggaccgtccacatcgaggcta 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  9239994 tgttggatcatgaggggagcttgggggaccgtccacatcgaggcta 9239949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 29644890 - 29644929
Alignment:
Q  195 gaggggagcttgggg-accgtccacatcgaggctaaaaca 233  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  29644890 gaggggagcttgggggaccgtccacatcgaggctaaaaca 29644929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 37850579 - 37850622
Alignment:
Q  185 gttggatcatgaggggagcttggggaccgtccacatcgaggcta 228  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  37850579 gttggatcatgaggggagctaggggaccgtccacatcgaggcta 37850622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 31899079 - 31899121
Alignment:
Q  183 ttgttggatcatgaggggagcttggggaccgtccacatcgagg 225  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  31899079 ttgttggatcatgaggggagcttggggaccgttcacatcgagg 31899121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 47129549 - 47129505
Alignment:
Q  184 tgttggatcatgaggggagcttggggaccgtccacatcgaggcta 228  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  47129549 tgttgggtcatgaggggagctcggggaccgtccacatcgaggcta 47129505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 47129275 - 47129226
Alignment:
Q  184 tgttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||| ||||    
T  47129275 tgttggatcatgaggggagctcggggaccgtctacattgaggctagaaca 47129226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 30244534 - 30244489
Alignment:
Q  183 ttgttggatcatgaggggagcttg-gggaccgtccacatcgaggct 227  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||    
T  30244534 ttgttgggtcatgaggggagcctgagggaccgtccacatcgaggct 30244489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 16455092 - 16455038
Alignment:
Q  180 atgttgttggatcatgaggggagcttgggg-accgtccacatcgaggctaaaaca 233  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||    
T  16455092 atgttgttggattatgaggggagctcgggggaccgtccacatcgaggctagaaca 16455038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 2579087 - 2579136
Alignment:
Q  184 tgttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||| ||||    
T  2579087 tgttgggtcatgaggggagctcggggaccgtgcacatcgaggctagaaca 2579136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 2579850 - 2579899
Alignment:
Q  184 tgttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    |||||| | |||||||||||||||||||| ||||||||||||||| ||||    
T  2579850 tgttgggtaatgaggggagcttggggaccttccacatcgaggctagaaca 2579899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 2843737 - 2843686
Alignment:
Q  183 ttgttggatcatgaggggagcttgggg-accgtccacatcgaggctaaaaca 233  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||| ||||    
T  2843737 ttgttggatcatgaggggagttagggggaccgtccacatcgaggctagaaca 2843686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 5832007 - 5832054
Alignment:
Q  186 ttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    |||| ||||||||||||| ||||||||||| |||||||||||| ||||    
T  5832007 ttgggtcatgaggggagcctggggaccgtctacatcgaggctagaaca 5832054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 44620838 - 44620798
Alignment:
Q  186 ttggatcatgaggggagctt-ggggaccgtccacatcgagg 225  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  44620838 ttggatcatgaggggagcttgggggaccgtccacatcgagg 44620798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 36608636 - 36608686
Alignment:
Q  184 tgttggatcatgaggggagcttgggg-accgtccacatcgaggctaaaaca 233  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  36608636 tgttgggtcacgaggggagcttgggggaccgtccacatcgaggctagaaca 36608686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 44621180 - 44621138
Alignment:
Q  184 tgttggatcatgaggggagcttggggaccgtccacatcgaggcta 228  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  44621180 tgttggatcatgagaggagc--ggggaccgtccacatcgaggcta 44621138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 5916048 - 5915998
Alignment:
Q  183 ttgttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    ||||||||||||  |||||| | ||||||||||||||||||||||| ||||    
T  5916048 ttgttggatcattgggggagttcggggaccgtccacatcgaggctagaaca 5915998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 8918742 - 8918791
Alignment:
Q  183 ttgttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    ||||||| ||| |||||||||| |||||||||||||||||||| |||||||    
T  8918742 ttgttgggtcacgaggggagct-ggggaccgtccacatcgaggttaaaaca 8918791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 37544469 - 37544517
Alignment:
Q  185 gttggatcatgaggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| ||||    
T  37544469 gttgggtcatgaggggaactcggggatcgtccacatcgaggctagaaca 37544517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 41632950 - 41632913
Alignment:
Q  196 aggggagcttggggaccgtccacatcgaggctaaaaca 233  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  41632950 aggggagctgggggaccgtccacatcgagactaaaaca 41632913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University