View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_high_2 (Length: 473)
Name: NF2620_high_2
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Complemental strand, 12692075 - 12691613
Alignment:
| Q |
4 |
agaagcaaaagtctaacagccaacaataataggatagccagtaaaaaattaataataatatatgtaaatactcttacattgagggttaatcgtaccattc |
103 |
Q |
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| T |
12692075 |
agaagcaaaggtctaacagccaacaataataggatagccagtaaaaaattaataataatatatgtaaatgctcttacattgagggttaatcgtaccattc |
12691976 |
T |
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| Q |
104 |
agtttaacatttcaatttacttgtattggtttagtcccgcgtatatttccttcccatttagatttgtcnnnnnnntaaataaataaagttttaagataat |
203 |
Q |
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| T |
12691975 |
agtttaacatttcaatttacttgtattggtttagtcccgcgtatatttccttcccatttagatttgtcaaaaaaataaataaataaagttttaagataat |
12691876 |
T |
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| Q |
204 |
ggaaatatctagttcccattatctgtaacaaataaacaattgattcactggttttttctttatctgttgatgttttgtttaagaatgataaataagaaaa |
303 |
Q |
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| T |
12691875 |
ggaaatatctagttcccattatctgtaacaaataaacaattgattcactggttttttctttatctgttgatgttttgtttaagag-gataaataagaaaa |
12691777 |
T |
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| Q |
304 |
agaaatctttgtctcaacatttttaaaattcgagaagggttaccaaatgtaggtagcattacaaaaataaatatgagtttagaaattattaccacataga |
403 |
Q |
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| T |
12691776 |
agaaatctttgattcaacatttttaaaattcgagaagggttaccaaatgtaggtagcatgacaaaaataaatatgagtttagaaattattaccacataga |
12691677 |
T |
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| Q |
404 |
agatgaacatttgctgttagtgttcttgctgaaatagtattccctttaccctttttcttctcac |
467 |
Q |
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| T |
12691676 |
agatgaacatttgctgttagtgttcttgctgaaatagtattccctttaccctttttcttctcac |
12691613 |
T |
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