View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_high_4 (Length: 360)
Name: NF2620_high_4
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 45270803 - 45271162
Alignment:
| Q |
1 |
taccgtctatgttcggtaagagacactttgatttgaataagaagcgaggagatattcattttcaactgtcaaatggcagagtttggcctgcaaagtaccg |
100 |
Q |
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| T |
45270803 |
taccatctatgttcggtaagagacactttgatttgaataagaagcgaggagatattcattttcaactgtcaaatggcagagtttggcctgcaaagtaccg |
45270902 |
T |
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| Q |
101 |
aatcaggatgtcccacacaggactaagatttgaactctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaacttt |
200 |
Q |
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| T |
45270903 |
aatcaggatgtcccacacaggactaagatttgaactctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaacttt |
45271002 |
T |
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| Q |
201 |
gagctcattcttagtactaatatgactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaatt |
300 |
Q |
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| T |
45271003 |
gagctcattcttagtactaatatgactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaatt |
45271102 |
T |
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| Q |
301 |
ggtgtttaattttctttccaattccttttctcatatgataaataaatttattcttccact |
360 |
Q |
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| T |
45271103 |
ggtgtttaattttctttccaattccttttctcatatgacaaataaatttattcttccact |
45271162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 16868900 - 16869199
Alignment:
| Q |
15 |
ggtaagagacactttgatttgaataagaagcgaggagatattcattttcaactgtcaaatggcagagtttggcctgcaaagtaccgaatcaggatgtccc |
114 |
Q |
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| T |
16868900 |
ggtaatagacactttgatttggataagaagagaggagatattcattttcaggtgttaaatgaaggagtttggcctacaaggttttctatcaggaagtcca |
16868999 |
T |
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| Q |
115 |
acacaggactaagatttgaactctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaactttgagctcat-tctta |
213 |
Q |
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| T |
16869000 |
gaacaggactacagtttgaaatcacaggtggatggaaggcatttgcagaggacaataagttgaaagttggcgatgtttgcaaatttgagctcatctctt- |
16869098 |
T |
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| Q |
214 |
gtactaatatgactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaattggtgtttaatttt |
313 |
Q |
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| T |
16869099 |
gcactatacttaccttcattgttcatatctttagagagacagacaatgacaacacaaattgttcagcatctcaaagtatgattaattgatgtttagtttt |
16869198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 16863981 - 16864277
Alignment:
| Q |
15 |
ggtaagagacactttgatttgaataagaagcgaggagatattcattttcaactgtcaaatggcagagtttggcctgcaaagtaccgaatcaggatgtccc |
114 |
Q |
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| T |
16863981 |
ggtaatagacactttgatttggataagaagagaggagatgtatatttgg---tgttaaatgaaggaatttggcctgcaaagtacctaatcaggatgaccc |
16864077 |
T |
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| Q |
115 |
acacaggactaagatttgaactctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaactttgagctcat-tctta |
213 |
Q |
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| T |
16864078 |
ttaaaggaccacattttgatctcacaactggatggaaggcatttgcaaaggacaataagttgaaagttgacgatgtttgcaaatttgagctcatctctt- |
16864176 |
T |
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| Q |
214 |
gtactaatatgactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaattggtgtttaatttt |
313 |
Q |
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| T |
16864177 |
gcactatacttaccttcattgttcacatctttagagagacagacaatgacaacacaaattgttcagcatctcaaagtatgattaattgatatttagtttt |
16864276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 16874275 - 16874577
Alignment:
| Q |
15 |
ggtaagagacactttgatttgaataagaagcgaggagatattcattttcaactgtcaaatggcagagtttggcctgcaaagtaccgaatcaggatgtccc |
114 |
Q |
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| T |
16874275 |
ggtaatagacactttgatttggataagaagagaggagatatttattttcaggtgttaaataaaggagtttggcctgcaaagtactctatcaagaagaccc |
16874374 |
T |
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| Q |
115 |
acacaggactaagatttgaactct---caagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaactttgagctcat-tc |
210 |
Q |
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| T |
16874375 |
gtaacggactacattttgaactcatgacaaccggatggaaggcatttgcaaaggacaataagttgaaagttgacgatgtttgcaagtttgagctcatctc |
16874474 |
T |
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| Q |
211 |
ttagtactaatatgactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaattggtgtttaat |
310 |
Q |
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| T |
16874475 |
tt-gcactatacttaccttcattgttcatatctttagagagacagacaatgacaacaccaattgttctacatttcaaagtaggatcaattgatttttaat |
16874573 |
T |
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| Q |
311 |
tttc |
314 |
Q |
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|||| |
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| T |
16874574 |
tttc |
16874577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 314
Target Start/End: Original strand, 17606879 - 17607069
Alignment:
| Q |
124 |
taagatttgaactctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaactttgagctcattcttagtactaatat |
223 |
Q |
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|||||||||||||| ||||||||||| || || ||||| |||||||||||||||||||| |||| |||||| ||||||||||| ||| |||| | |
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| T |
17606879 |
taagatttgaactcacaagtggatgggaggagtttgcaaaggacaataacttgaaagttggtgatgtttgcaaatttgagctcatctctagcactatact |
17606978 |
T |
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| Q |
224 |
gactttccaagttcatatcttcagggagacagataaagacaacacaaattgttcaacatctcaaagtaggattaattggtgtttaattttc |
314 |
Q |
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| T |
17606979 |
taccttcattgttcacgtctttagagaaacagacaatgacaagaaaaagtgttcaacatctcaaagtaggatgaattgatttttaattttc |
17607069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 17615017 - 17615086
Alignment:
| Q |
137 |
ctcaagtggatggaagacattcgcaaaagacaataacttgaaagttggcgatgcttgcaactttgagctc |
206 |
Q |
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| T |
17615017 |
ctcaagtgaatggaagacatttgcagaagacaacaacttgaaagttggtgatgtttgcacttttgagctc |
17615086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 17606759 - 17606807
Alignment:
| Q |
10 |
tgttcggtaagagacactttgatttgaataagaagcgaggagatattca |
58 |
Q |
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| T |
17606759 |
tgtttggtaagacacactttgatttgaataagaaaagagaagatattca |
17606807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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