View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2620_high_6 (Length: 328)
Name: NF2620_high_6
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 40631456 - 40631142
Alignment:
| Q |
7 |
tccaagaaaataatactctgtttttagaaaaccttacacttgccttttcataatgagagcttccaactgtaataatgaagaggatgatagaaatttaatg |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40631456 |
tccaataaaataatactctgtttttagaaaaccttacacttgccttttcataatgagagcttccaactgtaataatgaagaggatgatagaaatttaatg |
40631357 |
T |
|
| Q |
107 |
aataccataaaatgatgtataacaaaaatttgatgaatac----------gtgaaaacaaaagaatgaagaggttaaaaagtgaatagcaacatgttcat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40631356 |
aataccataaaatgatgtataacaaaaatttgatgaatacctatgaatatgtgaaaacaaaagaatgaagaggttaaaaagtgaatagcaacatgttcat |
40631257 |
T |
|
| Q |
197 |
aacattgcagtttggagtaattagtgtatattctacagcattttatgaagcctgatcttaatgaaatttaatttttattgtttatatttgtgtcttaata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40631256 |
aacattgcagtttggagtaattagtgtatattctacagcattttatgaagccagatcttaatgaaatttaatttttattgtttatatttgtgccttaata |
40631157 |
T |
|
| Q |
297 |
ataataccctggatg |
311 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40631156 |
ataataccctggatg |
40631142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 42775222 - 42775128
Alignment:
| Q |
52 |
tttcataatgagagcttccaactgtaataatgaagaggatgatagaaatttaatgaataccataaaatgatgtataacaaaaatttgatgaatac |
146 |
Q |
| |
|
|||||||||||| || ||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
42775222 |
tttcataatgagggcatccaattgtaaaaatgaagaggatgatatatatttaatgaataccataaaatgatgtataacataaatttgacgaatac |
42775128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 33233429 - 33233379
Alignment:
| Q |
258 |
tgaaatttaatttttattgtttatatttgtgtcttaataataataccctggatg |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
33233429 |
tgaaattta-tttttattgtttatatttgtgtcttaat--taatacccgggatg |
33233379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 21443627 - 21443586
Alignment:
| Q |
105 |
tgaataccataaaatgatgtataacaaaaatttgatgaatac |
146 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
21443627 |
tgaagaccataaaatgatgtatagcagaaatttgatgaatac |
21443586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 21444010 - 21443982
Alignment:
| Q |
99 |
atttaatgaataccataaaatgatgtata |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21444010 |
atttaatgaataccataaaatgatgtata |
21443982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University