View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_high_9 (Length: 306)
Name: NF2620_high_9
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 18319276 - 18318992
Alignment:
| Q |
5 |
aaatgttaaataatcacaattagtatcttaaataaacannnnnnnnagcattgaaagatcaccttgataatgagctatgaagcacggacactaacaccgc |
104 |
Q |
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| T |
18319276 |
aaatgttaaataatcacaagtagtatcttaaataaacattttttt-agcattgaaagatcaccttgataatgagctatgaagcacggacactaacaccgt |
18319178 |
T |
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| Q |
105 |
taatgatttgagaaaatcacgtagttcagtgattaaatgggccagtatcgtggcggtgtcaatgtccgtgctttaaccatgaattgcaggtaaaaccaag |
204 |
Q |
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| T |
18319177 |
taatgatttgagaaaatcacgtagtgcagtgattaaatgggccagtatcgtggcggtgtcagtgtccgtgctttaaccatgaattgcaggtaaaaccaag |
18319078 |
T |
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| Q |
205 |
agactttaatggaggatttacgggaaacaacgttgagtattccggttcagaatagtattaagacttcaaagtcggtggtctctcat |
290 |
Q |
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| T |
18319077 |
agactttaatcgaggacttacgggaaacaacgttgagtattccggttcagaatagtattaagacttcaaagtcggtggtctctcat |
18318992 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 20549792 - 20549829
Alignment:
| Q |
98 |
acaccgctaatgatttgagaaaatcacgtagttcagtg |
135 |
Q |
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| T |
20549792 |
acaccgctaataatttgagaaaatcacgtaattcagtg |
20549829 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 6471958 - 6471910
Alignment:
| Q |
87 |
cacggacactaacaccgctaatgatttgagaaaatcacgtagttcagtg |
135 |
Q |
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| T |
6471958 |
cacggacactgacacggctaataatttgagaaaatcacataattcagtg |
6471910 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 30982935 - 30982899
Alignment:
| Q |
99 |
caccgctaatgatttgagaaaatcacgtagttcagtg |
135 |
Q |
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| T |
30982935 |
caccgctaatgatttgagaaaatcacatatttcagtg |
30982899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 44860310 - 44860358
Alignment:
| Q |
87 |
cacggacactaacaccgctaatgatttgagaaaatcacgtagttcagtg |
135 |
Q |
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|||||||||| ||||||||||| ||||||||||||| | || ||||||| |
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| T |
44860310 |
cacggacactgacaccgctaataatttgagaaaatcgcataattcagtg |
44860358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 19909292 - 19909324
Alignment:
| Q |
92 |
acactaacaccgctaatgatttgagaaaatcac |
124 |
Q |
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| T |
19909292 |
acactaacaccgctaataatttgagaaaatcac |
19909324 |
T |
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