View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2620_low_1 (Length: 496)

Name: NF2620_low_1
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2620_low_1
NF2620_low_1
[»] chr5 (2 HSPs)
chr5 (1-494)||(42332810-42333305)
chr5 (220-257)||(6239804-6239841)
[»] chr2 (4 HSPs)
chr2 (156-419)||(16287516-16287780)
chr2 (203-266)||(40368476-40368539)
chr2 (13-63)||(29060302-29060352)
chr2 (177-257)||(38624050-38624130)
[»] chr3 (4 HSPs)
chr3 (8-267)||(33335070-33335328)
chr3 (360-411)||(33334929-33334980)
chr3 (145-257)||(38394683-38394795)
chr3 (165-257)||(47746385-47746477)
[»] chr6 (4 HSPs)
chr6 (8-288)||(9856382-9856662)
chr6 (145-257)||(24395624-24395736)
chr6 (145-257)||(18780778-18780890)
chr6 (145-257)||(3297019-3297131)
[»] scaffold0074 (1 HSPs)
scaffold0074 (145-257)||(25708-25820)
[»] chr7 (7 HSPs)
chr7 (50-254)||(40054050-40054254)
chr7 (213-408)||(13807884-13808079)
chr7 (189-254)||(35769009-35769074)
chr7 (145-254)||(49146299-49146408)
chr7 (145-257)||(13760802-13760914)
chr7 (203-257)||(6802783-6802837)
chr7 (220-257)||(45854336-45854373)
[»] chr8 (3 HSPs)
chr8 (203-266)||(42452980-42453043)
chr8 (159-257)||(38246070-38246168)
chr8 (360-408)||(24788438-24788486)
[»] chr4 (3 HSPs)
chr4 (203-257)||(12376994-12377048)
chr4 (220-257)||(2473656-2473693)
chr4 (145-254)||(40851860-40851969)
[»] chr1 (3 HSPs)
chr1 (220-257)||(27068091-27068128)
chr1 (220-257)||(38158139-38158176)
chr1 (372-408)||(41159532-41159568)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 42333305 - 42332810
Alignment:
Q  1 ggagtaatgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacaccttttccttcattgcaatattttgagtgagttgt 100  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42333305 ggagtaatgccttcaactgacatggcttgtgtgggagggtgtggtacaactgaaactgctaaacaccttttccttcattgcaatatttcgagtgagttgt 42333206  T
Q  101 ggtatcaggtatggaagtggttagctattttttcggtgcacacaggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaat 200  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  42333205 ggtatcaggtatggaagtggttaggtattttttcggtgcatgcaggtgagctccaacatcattttattcaattcactaagatggcgggcatgccacaaat 42333106  T
Q  201 tactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaacatgatattccaacagacagttactaccccttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42333105 tactcatttatacttcaagattatttggttcgtaactgtttgggtgatttggaaggacatgaacaacatgatattccaacagacagttactaccccttct 42333006  T
Q  301 catttgttagaaaaagtaaagttaaattcttttttatgtctgaaagcaaagcatgcttgttttgttt-aaagttaccacgattggtggaaacatcccttt 399  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  42333005 catttgttagaaaaagtaaagttaaattcttttttatggctgaaagcaaagcatgagtgttttgtttaaaagttaccacgattggtggaaacatcccttt 42332906  T
Q  400 ctttgtatgagattacgtctacaa-nnnnnnnnnnnnnggttagtcctctttttgagtatcatcgtgactatgtaaatattgtctgtgctcctcct 494  Q
    |||||||||||||||| ||| |||              |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  42332905 ctttgtatgagattacctctgcaattttttttatttttggttggtcctctttttgagtatcatcgtgactatgtaaatattgtcggtgttcctcct 42332810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 6239841 - 6239804
Alignment:
Q  220 attatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  6239841 attatttggttcgcaactgtttggataatttggaagga 6239804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 156 - 419
Target Start/End: Original strand, 16287516 - 16287780
Alignment:
Q  156 acatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaag 255  Q
    ||||||||||||| | |||| |||||||| || |||||| ||  ||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  16287516 acatcattttatttagttcactaagatggcgg-catgcctcggtttattcatttatacttcaatattattgggttcgtaactgtttgggtgatttggaag 16287614  T
Q  256 gacgtgaacaacatgatattccaacagacagttactaccccttctcatttgttagaaaaagtaaagttaaattc--ttttttatgtctgaaagcaaagca 353  Q
    ||   |||||| | |||||||||| | |||||| |||| |||| || ||||||||||||| | |||||||||||  |||||||||  ||||||| || ||    
T  16287615 gagaggaacaataggatattccaataaacagtttctacaccttttcttttgttagaaaaaattaagttaaattcttttttttatggttgaaagccaatca 16287714  T
Q  354 tgcttgttttgtttaaagttaccacgattggtggaaacatccctttctttgtatgagattacgtct 419  Q
     || | |||| |||| || |||||||| ||||||||| || |||||||||||||| ||||| ||||    
T  16287715 ggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattatgtct 16287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 40368539 - 40368476
Alignment:
Q  203 ctcatttatacttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaa 266  Q
    ||||||||| ||||| |||||||||||| || ||| ||||| |||||||||||||  |||||||    
T  40368539 ctcatttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaatgaacaa 40368476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 29060352 - 29060302
Alignment:
Q  13 tcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaa 63  Q
    |||||||| ||| ||||| |||||||||||||||| || ||||||||||||    
T  29060352 tcaactgagacgacttgtgtgggagggtgtggtactaccgaaactgctaaa 29060302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 38624050 - 38624130
Alignment:
Q  177 taagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaagga 257  Q
    |||||||| ||||||||||  | || | |||||||  |||| ||||||||| || | |||| |||||||||||||||||||    
T  38624050 taagatggcgggcatgccattattttcacatttatttttcaggattatttgctttgcaactatttggatgatttggaagga 38624130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 33335328 - 33335070
Alignment:
Q  8 tgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacaccttttccttcattgcaatattttgagtgagttgtggtatca 107  Q
    ||||| ||| ||||||||||||| |||  || ||||||| | | |||||| || |||||||||||||||| |||||||||| || |||| | |||| |||    
T  33335328 tgcctacaaatgacacggcttgtgtggctggttgtggtatatccgaaactactcaacaccttttccttcaatgcaatatttcgaatgagctatggtctca 33335229  T
Q  108 ggtatggaagtggttagctattttttcggtgcacacaggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcat 207  Q
    ||| ||||||||| |||  |||||| |||||||  || ||||||| | ||| ||||||||||| |||| |||||||| ||||||||||  | ||||||||    
T  33335228 ggtgtggaagtggctagggattttt-cggtgcatgcatgtgagcttcgacaccattttattcagttcactaagatggcgggcatgccaacatttactcat 33335130  T
Q  208 ttatacttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaac 267  Q
    ||||||||   |||||||||||| | |||||| ||  | |||||||||||  ||||||||    
T  33335129 ttatacttgcggattatttggtttgcaactgtctgagtaatttggaaggaaatgaacaac 33335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 33334980 - 33334929
Alignment:
Q  360 ttttgtttaaagttaccacgattggtggaaacatccctttctttgtatgaga 411  Q
    ||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  33334980 ttttgattatagttatcacgattggtggaaacatcccattctttgtatgaga 33334929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 38394683 - 38394795
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgcca-cgaattactcatttatacttcaagattatttggttcgtaactgtttgg 243  Q
    |||||||||| ||| ||||||| ||| |||| |||||||| ||| |||||| |  ||| |||||||||  ||||||||||||||||| || ||| |||||    
T  38394683 ggtgagctccgacaacattttactcagttcactaagatggcgggtatgccaacctatt-ctcatttatttttcaagattatttggtttgttactatttgg 38394781  T
Q  244 atgatttggaagga 257  Q
    ||  ||||||||||    
T  38394782 atcctttggaagga 38394795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 47746477 - 47746385
Alignment:
Q  165 tattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaagga 257  Q
    |||||| |||| |||||||| ||| ||||| |   ||||||| ||||| |||| |||||||||||| |  ||||||| | |||||||||||||    
T  47746477 tattcagttcactaagatggcgggaatgcctctttttactcagttatatttcaggattatttggtttgccactgtttaggtgatttggaagga 47746385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 9856662 - 9856382
Alignment:
Q  8 tgccttcaactgacacggcttgtttgggagggtgtggtacaactgaaactgctaaacaccttttccttcattgcaatattttgagtgagttgtggtatca 107  Q
    ||||| ||||||||||||| ||| |||  ||||||| |||||| ||||||||| ||||||||||||||||||||| | ||| ||||||  | ||||||||    
T  9856662 tgcctacaactgacacggcctgtgtggttgggtgtgatacaaccgaaactgctgaacaccttttccttcattgcactttttcgagtgacctttggtatca 9856563  T
Q  108 ggtatggaagtggttagctattttttcggtgcacacaggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcat 207  Q
     || ||||||||||| |  ||||  ||||| ||  |  ||||||| | | ||  ||||||||| |||| |||| ||| |||| ||||| ||  | |||||    
T  9856562 tgtgtggaagtggttgggaatttaatcggtccatgcttgtgagcttcgatatggttttattcagttcactaagttggcgggcttgccaagacattctcat 9856463  T
Q  208 ttatacttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaacatgatattccaacagacagtt 288  Q
    |||||||||| |||||||||||| | | |||| ||| |||||||||| ||   |||||||||| ||||| |||| ||||||    
T  9856462 ttatacttcaggattatttggtttgcagctgtctgggtgatttggaaagaatggaacaacatggtattcaaacatacagtt 9856382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 24395624 - 24395736
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| ||||||||||||| ||| |||| ||||||||  ||||||||| ||| | | ||||||| ||| |  || |||||||| | ||||||||||     
T  24395624 ggtgagcttcaacatcattttaatcagttcactaagatggcaggcatgccatgaacttcccatttattcttaactataatttggtttgcaactgtttggg 24395723  T
Q  245 tgatttggaagga 257  Q
    |||||||||||||    
T  24395724 tgatttggaagga 24395736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 18780890 - 18780778
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgcca-cgaattactcatttatacttcaagattatttggttcgtaactgtttgg 243  Q
    |||||||| | ||| ||||||| ||| |||| |||||||| |||||||||| |  ||| |||||||||  ||||||||||||||||| |||| | |||||    
T  18780890 ggtgagcttcgacaacattttactcagttcactaagatggcgggcatgccaacctatt-ctcatttatttttcaagattatttggtttgtaaatatttgg 18780792  T
Q  244 atgatttggaagga 257  Q
     || ||||||||||    
T  18780791 gtgctttggaagga 18780778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 3297131 - 3297019
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| | ||||||||||||||| || |  |||||||  ||||||||| ||| ||| ||||||| ||| |   | |||||||| | ||||||||||     
T  3297131 ggtgagcttcgacatcattttattcagtttaccaagatggcaggcatgccaagaactacacatttattcttaactgtgatttggtttgcaactgtttggg 3297032  T
Q  245 tgatttggaagga 257  Q
    |||| ||||||||    
T  3297031 tgatatggaagga 3297019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 25708 - 25820
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| ||||||||||||| ||| |||| ||||||||  ||||||||| ||| | | ||||||| ||| |  || |||||||| | |||||||||||    
T  25708 ggtgagcttcaacatcattttaatcagttcactaagatggcaggcatgccatgaacttcccatttattcttaactataatttggtttgcaactgtttgga 25807  T
Q  245 tgatttggaagga 257  Q
    |||||||||||||    
T  25808 tgatttggaagga 25820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 40054254 - 40054050
Alignment:
Q  50 ctgaaactgctaaacaccttttccttcattgcaatattttgagtgagttgtggtatcaggtatggaagtggttagctattttttcggtgcacacaggtga 149  Q
    ||||||||||| ||||||| ||||||||||||| | ||| |||||   | ||||||||||| ||||||||||| |  |||| ||| || ||    |||||    
T  40054254 ctgaaactgctgaacacctcttccttcattgcactttttcgagtgccctttggtatcaggtgtggaagtggttgggaatttcttcagtccatgttggtga 40054155  T
Q  150 gctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatt 249  Q
    ||| || |  | |||||||||||| |  ||||||| |||| ||||| ||  | | ||||||||||||| ||||||||| || | |||| ||| | |||||    
T  40054154 gcttcatccacgttttattcaatttaccaagatggagggcttgccaagacattcacatttatacttcaggattatttgttttgcaactattttggtgatt 40054055  T
Q  250 tggaa 254  Q
    |||||    
T  40054054 tggaa 40054050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 408
Target Start/End: Complemental strand, 13808079 - 13807884
Alignment:
Q  213 cttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaacatgatattccaacagacagttactaccccttctcatttgttagaa 312  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||  ||||||||  | |||||||| | ||| || |  | ||||||  | |  | |||    
T  13808079 cttcaggattatttggtttgcaactgtttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaa 13807980  T
Q  313 aaagtaaagttaaattcttttttatgtctgaaagcaaagcatgcttgttttgtttaaagttaccacgattggtggaaacatccctttctttgtatg 408  Q
     |||||||||||||||| ||||||||  ||||| |||| ||||     || | ||| ||||| || |||||||||||||| | | |||||||||||    
T  13807979 caagtaaagttaaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaacacctcattctttgtatg 13807884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 35769074 - 35769009
Alignment:
Q  189 catgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaa 254  Q
    ||||||| || || ||||||||||||||| ||| |||||||| | |||| ||||||||||||||||    
T  35769074 catgccaagagtttctcatttatacttcaggataatttggtttgcaactatttggatgatttggaa 35769009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 49146299 - 49146408
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| | ||| |||||||||||||| |  ||||||| |||| ||||| ||  |   ||||||||||||| |||||||| ||| | ||||||||||     
T  49146299 ggtgagcttcgacaacattttattcaatttaccaagatggcgggcttgccaagacattgacatttatacttcaggattattttgtttgcaactgtttggg 49146398  T
Q  245 tgatttggaa 254  Q
    ||||||||||    
T  49146399 tgatttggaa 49146408  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 13760802 - 13760914
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| | ||||||||||||||| || | |||||||| |||||||||| || || ||||||||| | | | ||| |||||||| |  |||||||||     
T  13760802 ggtgagcttcgacatcattttattcagtttactaagatggcgggcatgccaagattttctcatttattcctaaggataatttggtttgctactgtttggg 13760901  T
Q  245 tgatttggaagga 257  Q
    |||| || |||||    
T  13760902 tgatatgaaagga 13760914  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 6802783 - 6802837
Alignment:
Q  203 ctcatttatacttcaagattatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||| ||||| |||||||||||| || ||| ||||| |||||||||||||    
T  6802783 ctcatttattcttcacgattatttggtttgtcactatttgggtgatttggaagga 6802837  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 45854373 - 45854336
Alignment:
Q  220 attatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  45854373 attatttggttcgcaactgtttggatgatatggaagga 45854336  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 42452980 - 42453043
Alignment:
Q  203 ctcatttatacttcaagattatttggttcgtaactgtttggatgatttggaaggacgtgaacaa 266  Q
    ||||||||| ||||| |||||||||||| || ||| ||||| |||||||||||||  |||||||    
T  42452980 ctcatttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaatgaacaa 42453043  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 38246168 - 38246070
Alignment:
Q  159 tcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttggatgatttggaagga 257  Q
    |||||||| ||| |||| ||||||||| ||||||||   | || | ||||||| |||||||||||||||||| | || |  |||| |||||||||||||    
T  38246168 tcattttactcagttcactaagatggttggcatgccgatattttcacatttattcttcaagattatttggtttgcaattaattgggtgatttggaagga 38246070  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 24788486 - 24788438
Alignment:
Q  360 ttttgtttaaagttaccacgattggtggaaacatccctttctttgtatg 408  Q
    ||||||||| ||||||||||| ||||||| ||| ||| |||||||||||    
T  24788486 ttttgtttatagttaccacgactggtggagacaacccattctttgtatg 24788438  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 12377048 - 12376994
Alignment:
Q  203 ctcatttatacttcaagattatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||| ||||| |||||||||||| || ||| ||||| |||||||||||||    
T  12377048 ctcatttattcttcacgattatttggtttgtcactatttgggtgatttggaagga 12376994  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 2473693 - 2473656
Alignment:
Q  220 attatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  2473693 attatttggttcgcaactgtttggatgatatggaagga 2473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 40851860 - 40851969
Alignment:
Q  145 ggtgagctccaacatcattttattcaattcattaagatggtgggcatgccacgaattactcatttatacttcaagattatttggttcgtaactgtttgga 244  Q
    |||||||| | ||||||||||||||| || |  || ||||| ||||||||  || || ||||||||||||||| ||| || ||||| | | || |||||     
T  40851860 ggtgagcttcgacatcattttattcagtttaccaaaatggttggcatgcctagagtttctcatttatacttcaggataatatggtttgcagctatttggg 40851959  T
Q  245 tgatttggaa 254  Q
    ||||||||||    
T  40851960 tgatttggaa 40851969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 27068091 - 27068128
Alignment:
Q  220 attatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27068091 attatttggttcgcaactgtttggatgatatggaagga 27068128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 38158139 - 38158176
Alignment:
Q  220 attatttggttcgtaactgtttggatgatttggaagga 257  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  38158139 attatttggttcgcaactgtttgaatgatttggaagga 38158176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 41159532 - 41159568
Alignment:
Q  372 ttaccacgattggtggaaacatccctttctttgtatg 408  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  41159532 ttaccacgattggtggaaacaccccattctttgtatg 41159568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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