View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2620_low_11 (Length: 293)
Name: NF2620_low_11
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 43595966 - 43596252
Alignment:
| Q |
13 |
aatatacatttcgtccactctagtgtgttttctt----atgggtgtgtttgcataaacattttaaataagctcttattgcattagtgcttatgtatatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43595966 |
aatatacatttcgtccactctagtgtgttttcttcaacatgggtgtgtttgcataaacattttaaataagctcttattgcattagtgcttgtgtatatgt |
43596065 |
T |
|
| Q |
109 |
tatatctattatcacataaggcaaaacagctataaatattaaatatgttataagttgttagaaaaactctgaaatgcttgc------------------- |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43596066 |
tatatctattatcacataaggcaaaacagctataaatattaaatatgttataagttgttagaaaaactctgaaatgcttgcatatgtacttatgtcatag |
43596165 |
T |
|
| Q |
190 |
-atatgtaaaaataagttgtaaatcttggtaacttatgaattgctaattgatgcaggcaacttttgaggagggtatggtattggagg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43596166 |
gatatgtaaaaataagttgtaaatcttggtaacttatgaattgctaattgatgcaggcaacttttgaggagggtatggtattggagg |
43596252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University