View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_low_13 (Length: 282)
Name: NF2620_low_13
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 18319371 - 18319535
Alignment:
| Q |
111 |
cccatgaaaacggtattaaatgatgatcaaacggcagcgtttttagaagcttcaagatcagcagctttcttcaaaagattcatctcatcatcatcttcaa |
210 |
Q |
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| T |
18319371 |
cccatgaaaacggtattaaatgatgatcaaacggcagcgtttttagaagcttcaagatcagcagctttcttcaaaagattcatctcatcatcatcttcaa |
18319470 |
T |
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| Q |
211 |
gaaccatctgaataggcgaagaacccaatccatcagctatagcaagcataatcttcttcatctca |
275 |
Q |
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| T |
18319471 |
gaaccatctgaataggcgaagaacctaatccatcagcaatagcaagcataatcttcttcatctca |
18319535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 18319283 - 18319325
Alignment:
| Q |
20 |
ctatgtaattattctcatcatacaaccaaatacacgctaagtt |
62 |
Q |
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| T |
18319283 |
ctatgtaattattctcatcatataaccaaatacacgctaagtt |
18319325 |
T |
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